Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0609 ATGGAAGCCAGCGCCGGCCTTGTTGCCGGGTCTCACAACCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGGTGATAAGCTTAACCAAAATGTGCAGTGGGAGAAGGTTTTTGTTTGGTTTCAATGGTTTCAATGGTTTTGTGTATTTGTGTAATTGGTTTCTTGTTCTGCAGCCCAAGCCGTTGAAGAACTTGGATGGTCAAGTGTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGTAATGAATGTGGTTTTCCAGTCTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAACTGTGTCCTCAGTGTAAAACTAGATATAAGCGACTCAAAGGGAGTCCGAGGGTGGAGGGAGATGACGATGAAGAGGACATAGATGACATCGAACATGAGTTCAACATTGATGATGAGAGGAACAATCACAATCATATGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGTCCAGATGATGATGAAAATTCACAGTTTCCACCTGTTATTGCCGGAAGAACACAGCCAGCAAATGGTGAGCTTCCTTTATCATCTCAAGGTTATGGAGATCAGATGTTATCTTCTTCACTGCACAAACGTGTGCATCCTTATCCAGTTTCTGAACCAGGGAGTGCAAGATGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCAATGATTGATGCAGCTAGACAGCCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCTCGGCTCGTTATTCTTGCCTTCTTCCTTCGATATCGGATACTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAGATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTTCCCAAATGGTTCCCTATCGATCGTGAAACCTACTTGGATCGCCTATCCCTTAGGTATGAACCAGAGGGTGAACCTAATTTGCTTGCTCCAGTGGACATCTTTGTCAGTACTGTGGATCCAATGAAGGAACCTCCTCTTGTAACAGCCAACACAATCTTATCTATCTTGGCCATGGACTACCCAGTTGATAAGATTTCATGCTACGTTTCAGATGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCCAGGAAATGGGTACCCTTCTGTAAGAAGTTTTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTAAAGGACAAAGTCCAACCAACCTTTGTAAAAGAACGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCTCAAGTAGCAAAAGCAGTGAAAGTTCCCACAGAAGGATGGATAATGCAAGATGGAACACCATGGCCAGGAAACAATACAAAGGATCATCCCGGTATGATCCAAGTCTTTCTGGGTCATAGTGGAGGACTTGATGCTGAAGGAAATGAACTCCCCCGCCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCTGGTGCCATGAATGCCTTGATTCGTGTCTCGGCCGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGCTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTTCAATTTCCACAAAGATTTGATGGTATAGATAGGCACGATCGTTATGCCAACAGGAACACAGTCTTCTTTGATATTAACATGAGAGGTTTAGATGGAATTCAGGGCCCTGTGTATGTCGGCACAGGTTGTGTTTTCAGGAGGCAGGCTTTATATGGTTATGACCCTCCGAAAGGTCCCAAACGCCCAAAAATGGTAAGCTGCGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAAAGTGGAGTAGATGGAGATGCTGCAGGGATGGACGGCGACAAAGAGCTATTAATGTCTCAAATGAATTTTGAAAAGAAATTTGGACAGTCGTCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGTGGTGTTCCTCCCTCCTCAAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCACGTTATCAGTTGTGGTTATGAAGACAAAACTGAATGGGGTACCGAGTTGGGCTGGATTTATGGATCCATCACAGAGGATATTCTAACAGGTTTCAAGATGCATTGCCGTGGCTGGAGATCCATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTAAACCAGGTGCTTCGGTGGGCTCTCGGATCTATTGAAATTTTTTTCAGTAACCACTGCCCTGTTTGGTATGGTTATAAGGGTGGAAAGCTAAAGTGGCTCGAGAGATTTGCATATGTTAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCCCCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTGATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTGTTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACGGTTACATCCAAAGCAACAGATGATGAGGACTTTGGAGAATTATATGCCTTCAAATGGACCACTCTGTTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTCGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTGTTTGGTAAGCTTTTCTTCGCCTTCTGGGTGATTGTCCATCTCTATCCATTCCTTAAAGGTCTGATGGGCAGACAAAACCGCACACCAACTATTGTTGTCATATGGTCCGTGCTGTTAGCTTCGATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGGCCTGACACTAAGAAATGTGGACTAAATTGCTGA 3207 44.06 MEASAGLVAGSHNRNELVVIHGHEEVISLTKMCSGRRFLFGFNGFNGFVYLCNWFLVLQPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHNHMAEAMLHGKMSYGRGPDDDENSQFPPVIAGRTQPANGELPLSSQGYGDQMLSSSLHKRVHPYPVSEPGSARWDEKREEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEPEGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAVKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVSCDCCPCFGRRKKLKSGVDGDAAGMDGDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4143842 4148752 + MC06g0502 Mch6g0609 690056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0609 1068 Pfam Cellulose synthase 366 1062 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Mch6g0609 1068 SUPERFAMILY RING/U-box 59 141 - -
Mch6g0609 1068 CDD mRING-HC-C4C4_CesA 69 119 - -
Mch6g0609 1068 FunFam Cellulose synthase 57 144 - -
Mch6g0609 1068 FunFam Cellulose synthase 483 657 - -
Mch6g0609 1068 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1037 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Mch6g0609 1068 Pfam Zinc-binding RING-finger 61 137 IPR027934 -
Mch6g0609 1068 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 477 657 IPR029044 -
Mch6g0609 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 144 IPR013083 -
Mch6g0609 1068 SUPERFAMILY Nucleotide-diphospho-sugar transferases 379 892 IPR029044 -
Mch6g0609 1068 ProSiteProfiles Zinc finger RING-type profile. 71 117 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1050 Mch-Chr1:13468225 Mch6g0609 Mch-Chr6:4143842 0 dispersed
Mch2g0534 Mch-Chr2:3768551 Mch6g0609 Mch-Chr6:4143842 2.30E-135 dispersed
Mch2g0536 Mch-Chr2:3776059 Mch6g0609 Mch-Chr6:4143842 1.05E-55 dispersed
Mch6g0609 Mch-Chr6:4143842 Mch9g0557 Mch-Chr9:4059083 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0609 K10999 - csv:101214842 2019.2