Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0623 | ATGGCTGAGCGCGAAGGCTGTGAAACTGACCAACTCGGAAGCTCCAAGGCTACTGGAGGGCAGGAAGACGATGAGGAAGAAGAGATGGAAGATTCGGAGGATGAATCAGAGGTTGAGTTGGAAGATGGAGAAGGACGGGTCAGTGAGTCGCAATCGGCTGAGTTGAGGGCGGTTTCGTCGGTTAATGGAACTGCGGCGAGTGGGTCTCGTCCTGAAACCCTAGCGGCGCCTTCTGCGATTCAGTCATCGGAGAACGGTCGGTCTGATGGTTTTCTTGTCAATTCTGCTACGCAGTCGCTCCAAGGAGCTGAATTGAAGCCGGTTCTATCTTCCTGCAATGAGCCTTTGGCTGTTGAAGCAGTCCAGACAGATCAGGTGCAAGAACAAGGTGCAACTTGTAAAGGACCTGGTTCGGATCAGTCGCCAACTTCAGTAACCCAGTCTATCTCATCCTCTGCAAGCCCAAGTTTATCCGAACATAAACTGTCACCCAAGAAGGTCCATAAAGAATGTCAGCCAGAACCGAGCCAGAAAAATTCTTCCGACCGTAGAACTGTATCTCCTGTTGTTAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAGAGTCCCAAGGGCTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATTGAATGTTGTGATCACTCAGGCCACGTAACAGAGATTGTTTACAAGAGCCAACATAGCCATGATCCACCCAGGAAGATTAACAACCCAAAGGAAAGCAAGCTTGTACCATATGTTGAACCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAATAATTAGTGACTCAGATCCTCCCACGCCTTCAAAAGAACCTTTACGGGAAACAGCTATAGTCCTTGAAAGAAAACGACAGTACTCAAACGACTCTGATGGAAATGAAGAATTTAAGGTCAAAGATGAGAATGTCAATGAACCTGAGACAAAACTAAAAGTTAAGAAAAGCAGTGCCGGGTACTCAGGTTCTCCCTTAAAACCTGGAAAGAAACCAAAATTTGTGGTGCATGCTGCAGGCGATGTGGGAATCTCGGGTGATGGATATAGATGGCGCAAGTATGGTCAAAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACAGATGTACCTCTGCTGGGTGTCCCGTCCGCAAGCACATTGAATCAGCTGTGGAAAATCCAAACGCAGTGATTATAACATACAAGGGAATTCATGACCATGACACGCCCGTTCCAAAGAAACGACACGGTCCACCAAGCGCTCCTCTTGTAGCTGCTGCAGCTCCAGCCTCCATGAACAATATGCAACCGAAAAAGACAGACGCTGTTCAGAGCCAAATTTCTTCGACACAGTGGTCTGTGGATGCTGAAGGAGAGCTGACTGGTGAGGCCTTGGACCTTGGAGGTGAGAAAGCCATGGAATCTGCTCGAACTCTTCTAAGCATTGGATTTGAAATCAAGCCCTGCTGA | 1527 | 46.89 | MAEREGCETDQLGSSKATGGQEDDEEEEMEDSEDESEVELEDGEGRVSESQSAELRAVSSVNGTAASGSRPETLAAPSAIQSSENGRSDGFLVNSATQSLQGAELKPVLSSCNEPLAVEAVQTDQVQEQGATCKGPGSDQSPTSVTQSISSSASPSLSEHKLSPKKVHKECQPEPSQKNSSDRRTVSPVVNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHVTEIVYKSQHSHDPPRKINNPKESKLVPYVEPVVKKIIAEHSRRIISDSDPPTPSKEPLRETAIVLERKRQYSNDSDGNEEFKVKDENVNEPETKLKVKKSSAGYSGSPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGIHDHDTPVPKKRHGPPSAPLVAAAAPASMNNMQPKKTDAVQSQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4214812 | 4220420 | - | MC06g0514 | Mch6g0623 | 690070 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0623 | 508 | Coils | Coil | 22 | 42 | - | - | |
| Mch6g0623 | 508 | ProSiteProfiles | WRKY domain profile. | 197 | 255 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 309 | 350 | - | - | |
| Mch6g0623 | 508 | SUPERFAMILY | WRKY DNA-binding domain | 365 | 429 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 161 | 177 | - | - | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 309 | 338 | - | - | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 121 | 159 | - | - | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 21 | 42 | - | - | |
| Mch6g0623 | 508 | FunFam | WRKY transcription factor | 356 | 430 | - | - | |
| Mch6g0623 | 508 | ProSiteProfiles | WRKY domain profile. | 364 | 429 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 178 | 194 | - | - | |
| Mch6g0623 | 508 | SMART | WRKY_cls | 196 | 254 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | SMART | WRKY_cls | 369 | 428 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | Gene3D | WRKY domain | 182 | 256 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | Gene3D | WRKY domain | 354 | 430 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 121 | 200 | - | - | |
| Mch6g0623 | 508 | SUPERFAMILY | WRKY DNA-binding domain | 194 | 255 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | Pfam | WRKY DNA -binding domain | 371 | 427 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | Pfam | WRKY DNA -binding domain | 198 | 253 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch6g0623 | 508 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 101 | 452 | IPR044810 | GO:0003700(InterPro) | |
| Mch6g0623 | 508 | MobiDBLite | consensus disorder prediction | 52 | 93 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g0623 | Mch-Chr6:4214812 | Mch6g1412 | Mch-Chr6:12571243 | 1.33E-34 | dispersed | |
| Mch6g0623 | Mch-Chr6:4214812 | Mch9g2095 | Mch-Chr9:21929943 | 2.21E-46 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43533 | PF03106 | WRKY | 1.00E-23 | CL0274 | Mch | TF |
Pathway information