Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0629 ATGGCGTTGTTGCGGAAATTGTTCTTCCGGAAGCCACCGGATGGGCTTCTCGAGATCTGTGAAAGAGTTTACGTTTTCGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCTTCATTCTTGGTATTCAATTTTCGGAAATTAGAGATGCAAAGTCAGGTGGGTGATATCTTATCTAAGTACGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGATGCCCAGTTCTGACAATGGAAGTGATCCACCATTTTCTAAGATCATGCGAAAGTTGGCTTTCCCTTGGACTGAATAATGTTTTGTTAATGCACTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCACTCTTGATATATAGGAAACAGTATAGTGGGGAGCAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATCTCTTGTCTTCTGTGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAGTATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTCTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAGGATCCTCTCCTTGTCAGTGACCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATAGATGTTAATTGCCACATTCAAGGAGATGTTGTTCTTGAGTGCATCACTTTGCATGATGACATGGAACTTGAAGAGATGATGTTCAGAGCAATGTTTAATACAGCTTTTATACGGTCTAATATTTTAATTCTCAACCGTGAAGAGATCGATACATTGTGGAATGCTAAAGATAAATTTCCAAAAGTCTTCCGAGCAGAGATTATTTTCTCTGAGATGGATGCTGGAGCTTCTACTGTCGCGAGCGATATACTTTGCTTTGATGAGGAAGGTCTTCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCGGATGTGGCCCTTAATGTGCTCCATCAGATGAATGCCTTGAACATAAACCAAGATAAGTCGGACAACAATTCTCTTTGGAGTGCGCAAATGACTCCTTTACTTCAGTCTACAAGTCCCAGAAACCTTCAGCAGAAGAAGTCCACGTTGGAGAACAAAACCAAAATCCTAGAGAAGGAAGAATCTATTCGAACATCTAAAATTTCCCCGGATGCTGCTAAAACTGAACAGAACAATGAGTTACAAGCTACAGTAGTTGGCCCTCACCTGAGCAATCAATCTGCTTCAGGACGCCAACTGGTGCAAGATTCACCCAATTCACAGAGAAGAGATGGGACCTCATACAGTGCTTCAATTGGAAGCCATTCGTTACATGATTATGAAGGAGAAGCAGAGGTTTCTCATTTGAAAACTCAATCTTCAGCTCTTTCGAATGCAGCATTGGCGGTTTCCCTTGCACCTGAATCTCTTCAGAATAAAAGTGTCCTTACAAAAACAACACCACCGCCTCCTCCTCCTCTCCCCCAACTTCCCACGACTATTTCTTCTGCTGATTGTCTACTTCATCCTCCCCCGCCTCCAGCTGCACCACCACTCCCATCTAATAACTTTTCAACTCCAAGACCAGATAAATCATCGCTTACCAAGGAAATAGAAAGTCAGTTATCAACCATTAGCCCTCCACTATCTGTAACCTCTGCAATTAATTTCTCATTAGAGTCTTCTCCACCACCTCCTCCACCTCCACCTCCTTCTACACCTCCATTGAAGGAAACCATAGCGGTTAGAGTTAAAGCTTCTCCACCTACGCCCCCTCCTTTTCCTTCTACACTAGCTTCCTCTCCTAAAATTGCATCTTTAGTGCCTCAACCACCACCACCTCCTCCTTCTCCAATATCCACTGTAAATCATAAAATTTCATCCCCAATCCCTTCACCACCACCTCTTCCGCCTCCTCCAATGGTCATCACAGATCCCAAAATTTCCTCTCCAGTGCCTCCACCACCACCTCCTCTTCTTATGACGTCCACACAGGTTGAGAGTATTTCAACTTCTACATCTCTTCCTCCTCCACCGCCACCTCCTCTTCCTCTGATGTCCGGACAAGATGGAAGTACTTCAACATCTTCATCTCTTCCTCCACTGCCACCGCCTCTTCCATCCAGACAGGTTGGAAGTGCTTCAACATCTCCATCTGTACCTCCTCCACCGCCACCACCTGCTTCCACCACGGGCTCCTCCCCACCTGTTCCTTCTGCTCCCCCTCCTCCCACCCTTCCAGGGAAAGGGATTTCAAAATCTGGTGACCCGTTTCCTGGTTCTCTTGGCTCATCTAGGTCTTCCTCTCCCGTGCCACCAAGTATTTCTCCATCCAGTGGAAAGGGACGGAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGCTTCCAGAGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCAGAAGTCAGGTGCACGAGGCTCAGTTGGAAATAAATCCGAGAAAGTGCAACTGATTGATCACAGGCGAGCTTACAACTGTGAGATCATGCTTTCAAAGGTCAAGGTGCCTTTGCATGACTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCACTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCCACAAAGGAGGAAATGGATTTACTTAAGGGCTACAACGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTTTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAACTTCGAGTTTTTTCATTCAAGATACAGTTCAGTTCTCAGGTCACAGATCTTAAAAAAAGCCTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAATTCAGTCAAGTTCAAGAGAGTCATGCAGACAATACTCTCTCTGGGAAATGCTTTAAACCAGGGAACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGACACTCGTGCAAGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTTCTGACAAACTGCCAGAAGTTCTGGATTTTTCTCAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAAGAAATGCAAGCAATAAGCAAAGGGTTGGAGAAAGTTGTTCAAGAACTGTCTACATCTGAAAATGATGGCCCTATATCCAATAACTTCAGAAAGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCGCTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACATTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGACGGGGCACTTGCATAAGAAGACAAGACGATTGTCACACTCCCAAATTGAGATTGGCAACGTCAACATCAAGAATGGTGATATTCCCTTTGACATTTTATCCTGGTTGCCAACGGAGACTCTTCTTGAAATGAGGTGCGTTTCTAAAGAGTGGTATCAACTTATTTTAGACCGCTCATTCGTACAGGAACAGTTTCAGAAGACCGGATTGACGTTATCAGGTTTCATCTTTCAAGAGAACTACCAATCATGTATTGACGATATAAGAACATTTAGCTATATTTCAGTAAATGCAGATTCTAAGGTGCATAAAATGGTCATTGATTTCCTGCCCGAGGATGTTGTTATTTTGGCATCCTGTAATGGCCTTGTTTGTTGTAGAAGTTGCTTCCCTACACAGCACCCTACAATCTATGTCTGCAATCCCTTCTTCAAGAAATGGGTAAGTTTTGAAGTGCCTCAGCTGGACAAAAGAAGCAACATTGCTCTGGTATTTGATCCCATTAGGGACCCTATCAACACGTCGACAAATTTCAAAATAGTAAGAATTCAGCAGTTAGAGAATGAACAAGAGGAAAGGTACTACACGTTTAAAACATACTCTGCAGAAACAGGAGCCTGGAAGGAATCGAATGAAGTTTGCTATTCAAATGGCAATTTGTCCAAGAACAAAGGCATTTATGCTAAAGGGACCTTACATTGGCTTACTGATTCGGATCAGATCCTTACATTTGATACGGAGAAAGAACTGTCTCTCTTAATTCCATCTCCAATTCCTGCCATGGAAGTTTTCATCAACGTCCCTGGAACATGCATAGGAGAATCCAAGGGCCTACTGCATTTCATCATGATCTGCGAATATGGAATTATTGTATGGTGTCTGGAAGACTATTTTGAGACAAAATGGATGCTCAAACATTCAAAACGGCTCCAAGTGATTGAGGAAGAGAACCCAAAGATGTTTTTCAAACTATACAACAGCACGCAACATAAAGTGGTTAAAGGTATGGATCCATGGATAAATCCCATAGCATTTAAAGATGAGGTTCTATTGATGAGGGTGTATGGAATTTTCTATTCATACCACACTGAAACAGGCAAGGTGGTGGAAGTTTGTTCGCTTAACAGTTTGGGTCCAAACCCCTGGGCTGATCCTTCAGTGCTTCCTTATTCCTTGAGCTTGGTTCCCTTGGACGTTTCTCCCTCAAAATCCGACTCAAATAGCAACAGAAATCCC 4968 42.77 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEENYEVYLGGIVAQLREHLADASFLVFNFRKLEMQSQVGDILSKYDMTIMDYPQQYEGCPVLTMEVIHHFLRSCESWLSLGLNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSSVNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLHDDMELEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKVFRAEIIFSEMDAGASTVASDILCFDEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNINQDKSDNNSLWSAQMTPLLQSTSPRNLQQKKSTLENKTKILEKEESIRTSKISPDAAKTEQNNELQATVVGPHLSNQSASGRQLVQDSPNSQRRDGTSYSASIGSHSLHDYEGEAEVSHLKTQSSALSNAALAVSLAPESLQNKSVLTKTTPPPPPPLPQLPTTISSADCLLHPPPPPAAPPLPSNNFSTPRPDKSSLTKEIESQLSTISPPLSVTSAINFSLESSPPPPPPPPPSTPPLKETIAVRVKASPPTPPPFPSTLASSPKIASLVPQPPPPPPSPISTVNHKISSPIPSPPPLPPPPMVITDPKISSPVPPPPPPLLMTSTQVESISTSTSLPPPPPPPLPLMSGQDGSTSTSSSLPPLPPPLPSRQVGSASTSPSVPPPPPPPASTTGSSPPVPSAPPPPTLPGKGISKSGDPFPGSLGSSRSSSPVPPSISPSSGKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAETQKTGEASRAPEIDMSELESLFSAAVPAPDQQKSGARGSVGNKSEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYNGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKNSVKFKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKILSDKLPEVLDFSQDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRKVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKKTRRLSHSQIEIGNVNIKNGDIPFDILSWLPTETLLEMRCVSKEWYQLILDRSFVQEQFQKTGLTLSGFIFQENYQSCIDDIRTFSYISVNADSKVHKMVIDFLPEDVVILASCNGLVCCRSCFPTQHPTIYVCNPFFKKWVSFEVPQLDKRSNIALVFDPIRDPINTSTNFKIVRIQQLENEQEERYYTFKTYSAETGAWKESNEVCYSNGNLSKNKGIYAKGTLHWLTDSDQILTFDTEKELSLLIPSPIPAMEVFINVPGTCIGESKGLLHFIMICEYGIIVWCLEDYFETKWMLKHSKRLQVIEEENPKMFFKLYNSTQHKVVKGMDPWINPIAFKDEVLLMRVYGIFYSYHTETGKVVEVCSLNSLGPNPWADPSVLPYSLSLVPLDVSPSKSDSNSNRNP 1656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4253783 4273739 + MC06g0520 Mch6g0629 690076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0629 1656 MobiDBLite consensus disorder prediction 583 617 - -
Mch6g0629 1656 MobiDBLite consensus disorder prediction 468 499 - -
Mch6g0629 1656 Pfam Formin Homology 2 Domain 854 1220 IPR015425 -
Mch6g0629 1656 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Mch6g0629 1656 Gene3D - 200 340 - -
Mch6g0629 1656 SUPERFAMILY F-box domain 1272 1316 IPR036047 GO:0005515(InterPro)
Mch6g0629 1656 SMART PTEN_C2_2 197 337 IPR014020 -
Mch6g0629 1656 SMART fbox_2 1272 1308 IPR001810 GO:0005515(InterPro)
Mch6g0629 1656 MobiDBLite consensus disorder prediction 664 678 - -
Mch6g0629 1656 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Mch6g0629 1656 PANTHER FORMIN-J 651 1244 IPR051144 -
Mch6g0629 1656 MobiDBLite consensus disorder prediction 775 806 - -
Mch6g0629 1656 MobiDBLite consensus disorder prediction 618 634 - -
Mch6g0629 1656 MobiDBLite consensus disorder prediction 816 850 - -
Mch6g0629 1656 MobiDBLite consensus disorder prediction 686 719 - -
Mch6g0629 1656 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Mch6g0629 1656 SUPERFAMILY Formin homology 2 domain (FH2 domain) 780 1236 - -
Mch6g0629 1656 SMART it6_source 542 1288 IPR015425 -
Mch6g0629 1656 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Mch6g0629 1656 ProSiteProfiles Formin homology-2 (FH2) domain profile. 847 1245 IPR015425 -
Mch6g0629 1656 Coils Coil 1220 1240 - -
Mch6g0629 1656 Gene3D - 1269 1359 - -
Mch6g0629 1656 Gene3D Formin, FH2 domain 846 1230 IPR042201 -
Mch6g0629 1656 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Mch6g0629 1656 Pfam F-box domain 1275 1304 IPR001810 GO:0005515(InterPro)
Mch6g0629 1656 MobiDBLite consensus disorder prediction 565 582 - -
Mch6g0629 1656 MobiDBLite consensus disorder prediction 539 850 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0629 K28090 - - csv:101221713 1795.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1721 Mch-Chr3:18729607 Mch6g0629 Mch-Chr6:4253783 1.76E-267 dispersed
Mch6g0257 Mch-Chr6:1676940 Mch6g0629 Mch-Chr6:4253783 5.38E-287 dispersed
Mch6g0258 Mch-Chr6:1701803 Mch6g0629 Mch-Chr6:4253783 1.39E-115 dispersed
Mch6g2234 Mch-Chr6:24548290 Mch6g0629 Mch-Chr6:4253783 5.12E-275 transposed
Mch11g0505 Mch-Chr11:3197963 Mch6g0629 Mch-Chr6:4253783 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33