Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0631 GTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGTACTTTTGCTAAGGTTTACCATGCCCGGAACTTGAAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTGGGGATGATGGAGCAGATCAAGAGGGAGATCTCGGTGATGAAGATGGTGAAGCATCCGAATATTGTTGAGCTTCACGAGGTTATGGCGAGCAAATCGAAGATCTATTTTGCTATGGAGCTTGTTCGAGGCGGGGAGCTGTTCTCCAAAATATCCAGAGGTCGATTGAGAGAAGATGTGGCCAGAGTGTATTTTCAGCAGCTTATTTCTGCGATTGATTTTTGCCATAGTCGGGGGGTTTACCACAGGGACCTCAAGCCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTCACTGATTTTGGACTCAGCGCATTTTCAGAGCACTTGAAGCAGGATGGATTGCTGCACACCACTTGTGGTACGCCGGCGTATGTTGCGCCTGAAGTCATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTATGGTCATGCGGAGTCATCCTTTACGTTCTTCTCGCCGGGTTTCTTCCATTTCAGGACGACAACATTGTGGCCATGTACAGGAAGATTTACAGGGGAGACTTCAAGTGCCCGCCGTGGTTCTCACCGGAATCCCGCCGGTTAATCACAAAGCTCCTCGATCCAAATCCGAGCACACGAATTACAACTTCGAAGATCATGGAATCATCCTGGTTCAGGAAATCCGTGCCCCGGACTGTGATTACGAAAGAGGAGCAGGAATTCGACGAGAGCAACGAGAAATTGAAGCAGTCGGAGACGCTGAATGCTTTCCATATAATTTCACTATCAGAAGGCTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAAAAGGAGGAGCTGAGATTCGCGACGACGAGGCCGGCGAGCAGCGTGATATCGAAACTGGAAGAGGTAGCAAAGGCTGGGAAATTCAGTGTCAAAAAGAGCGAGTCGAGGGTCCGATTGCAAGGCCACGAGTGTGGAAGAAAAGGGAAACTGTCGGTGGCGGCGGAGATATTCGCCGTGACGCCGTCGTTCCTGGTGGTGGAGGTGAAGAAAGATCACGGCGACACGCTAGAATACAACCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATTGTCTGGACA 1230 50.98 VLHGKYELGRLLGHGTFAKVYHARNLKTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFKCPPWFSPESRRLITKLLDPNPSTRITTSKIMESSWFRKSVPRTVITKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGHECGRKGKLSVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4301878 4303107 + MC06g0522 Mch6g0631 690078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0631 410 CDD STKc_SnRK3 5 259 - -
Mch6g0631 410 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 404 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch6g0631 410 ProSiteProfiles Protein kinase domain profile. 6 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0631 410 Gene3D Phosphorylase Kinase; domain 1 3 87 - -
Mch6g0631 410 SUPERFAMILY Protein kinase-like (PK-like) 2 275 IPR011009 -
Mch6g0631 410 Pfam Protein kinase domain 6 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0631 410 Gene3D Transferase(Phosphotransferase) domain 1 88 266 - -
Mch6g0631 410 SMART serkin_6 6 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0631 410 ProSitePatterns Protein kinases ATP-binding region signature. 12 39 IPR017441 GO:0005524(InterPro)
Mch6g0631 410 Coils Coil 269 289 - -
Mch6g0631 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0631 410 FunFam Non-specific serine/threonine protein kinase 284 409 - -
Mch6g0631 410 Gene3D Kinase associated domain 1, KA1 284 410 - -
Mch6g0631 410 Pfam NAF domain 287 346 IPR004041 GO:0007165(InterPro)
Mch6g0631 410 FunFam Non-specific serine/threonine protein kinase 1 288 - -
Mch6g0631 410 CDD CIPK_C 290 405 - -
Mch6g0631 410 ProSiteProfiles NAF domain profile. 284 308 IPR018451 GO:0007165(InterPro)
Mch6g0631 410 FunFam Non-specific serine/threonine protein kinase 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0540 Mch-Chr5:3592707 Mch6g0631 Mch-Chr6:4301878 2.27E-104 dispersed
Mch6g0631 Mch-Chr6:4301878 Mch6g0715 Mch-Chr6:4914990 1.38E-130 dispersed
Mch8g2989 Mch-Chr8:32521646 Mch6g0631 Mch-Chr6:4301878 1.07E-264 transposed
Mch11g0507 Mch-Chr11:3220558 Mch6g0631 Mch-Chr6:4301878 1.32E-173 wgd
Mch6g0631 Mch-Chr6:4301878 Mch8g1066 Mch-Chr8:7538333 1.38E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77472 PF00069 Pkinase 1.00E-72 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0631 - - - 0.0