Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0632 ATGAAACAGGAGTGGCCAAGTATGATTTCAAAAATCAGGGTGAATGCAATTGCAGAAGGTTCAGATTCAAGCTGCATCACTTGTCCATTCCCAGCCAATGGATGCAGAAGACTAGGAAGGAGTTTAACCTCAAAATTCAAGGGTGTTGTCCCTCAGCAGAATGGCCACTGGGGTGCTCAAATATACGCCAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCGGAGAATGATGCAGCCATGGCTTATGATAGTGCAGCCATCAGAATCAGAAGTGGAGACTGTCATAGAAACTTTCCTTGGACCAAATTTACTATTGAAGAGCCCAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGATGGTTCTTATAGAACCAAATTTGCGGAGTATTTGAGGGATCGTTCTGAAAGTTCACAATCATCTGTAGGTCCCTCTGCTGGAAAGATGCATAAGAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAAGAGCTGACACCAAGCGATGTTGGTAAGTTAAACCGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTCCCTCCCATATCAGCCTGTGAAAAGGAAAATGAGGAAGGTATTATCGATGACGATCGTGATGTGCAGCTGGTATTTTTTGACAAAATGATGAGACAGTGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTTACGCGGGGTTGGAACCGATTTGTGAAGGAAAAGCAACTGAGAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAACAAAGGCAAGTGCTACTAAAACTACATTCTGTGTGGTGGATGTCAAAAATCGCCACAACAGTGGCAGCTCGATCGAGAACAATATCCAGAGTTGTGAAATGCAGCTGGATTTTTTGCGGGACGAAATCGAGGAATCGGTGTCGCCTAAGCAAGTAAACAATGAGATAAAAGATGATGCTGAAGTCAAGAGCTTCAAACTGTTTGGAGTGCATATTAAG 1020 41.86 MKQEWPSMISKIRVNAIAEGSDSSCITCPFPANGCRRLGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENDAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDRSESSQSSVGPSAGKMHKNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPPISACEKENEEGIIDDDRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLRANDTIAFYLCEATKASATKTTFCVVDVKNRHNSGSSIENNIQSCEMQLDFLRDEIEESVSPKQVNNEIKDDAEVKSFKLFGVHIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4308951 4309970 - MC06g0523 Mch6g0632 690079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0632 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 338 IPR044800 GO:0003700(InterPro)
Mch6g0632 340 ProSiteProfiles B3 DNA-binding domain profile. 167 283 IPR003340 GO:0003677(InterPro)
Mch6g0632 340 SMART B3_2 167 283 IPR003340 GO:0003677(InterPro)
Mch6g0632 340 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0632 340 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
Mch6g0632 340 SUPERFAMILY DNA-binding pseudobarrel domain 166 268 IPR015300 -
Mch6g0632 340 Gene3D - 162 292 IPR015300 -
Mch6g0632 340 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Mch6g0632 340 CDD B3_DNA 166 279 IPR003340 GO:0003677(InterPro)
Mch6g0632 340 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0632 340 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677(InterPro)
Mch6g0632 340 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0632 340 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0632 Mch-Chr6:4308951 Mch6g1101 Mch-Chr6:8033419 9.85E-105 dispersed
Mch6g0632 Mch-Chr6:4308951 Mch4g0688 Mch-Chr4:4587433 1.06E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43534 PF02362 B3 4.70E-24 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0632 K09287 - csv:101212246 571.237