Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0711 ATGGCAAGCTGCATAGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACCAATTTGTGGTCCGTGAATATGGCTGCCGCGTTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAACTACAATCTGTACAGTTGTAGCGGACCAGATTTTCAAGGTGATTTTGGTTCCTCCTCCAAATGTAACAACAATAAGATGGAAATTCGAGCTCCCACCACAATTCCAGCAGAGGAGAGAGTTGTGAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCATAGGGAAGCTTTCAGTACAGCTGCCAAAAACTGGGCACACTTCCCTCGTATTCACTTTGGCCTAATGTTGGAAACCAACAATAATCAAGTGAAGCTAGATGATGGTTTGTCAAGGGCTGCACTATTAAACAAATGA 564 43.97 MASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYSCSGPDFQGDFGSSSKCNNNKMEIRAPTTIPAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNNQVKLDDGLSRAALLNK 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4887665 4891117 + MC06g0595 Mch6g0711 690158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0711 187 PANTHER PROTEIN YABBY 6-RELATED 9 174 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Mch6g0711 187 CDD HMG-box_SF 118 154 - -
Mch6g0711 187 SUPERFAMILY HMG-box 101 157 IPR036910 -
Mch6g0711 187 FunFam axial regulator YABBY 5-like 102 160 - -
Mch6g0711 187 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
Mch6g0711 187 Gene3D High mobility group box domain 104 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0711 K25796 - - csv:101215951 352.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1534 Mch-Chr10:15271343 Mch6g0711 Mch-Chr6:4887665 2.79E-23 dispersed
Mch2g0212 Mch-Chr2:1603611 Mch6g0711 Mch-Chr6:4887665 1.39E-55 dispersed
Mch6g0711 Mch-Chr6:4887665 Mch6g1777 Mch-Chr6:20335000 3.41E-53 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch6g0711 Mch-Chr6:4887665 9.75E-39 transposed
Mch6g0711 Mch-Chr6:4887665 Mch8g3074 Mch-Chr8:33217996 1.53E-89 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2062 . 16 171 C2C2-YABBY Transcription Factor Family AT1G69180 62.2 8.0e-47 183.7
Mch6g1777 . 74 233 C2C2-YABBY Transcription Factor Family AT2G45190 59.8 2.0e-44 175.6
Mch2g0212 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.6 6.6e-57 217.2
Mch6g1777 . 30 222 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.9e-44 175.3
Mch6g0711 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 4.9e-44 174.5
Mch8g3074 . 5 181 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 4.2e-43 171.4
Mch6g1777 . 41 231 C2C2-YABBY Transcription Factor Family AT4G00180 54.6 4.7e-51 198.0
Mch9g2254 . 1 177 C2C2-YABBY Transcription Factor Family AT1G23420 53.0 1.5e-41 166.8
Mch6g0711 . 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.6 6.1e-62 233.8
Mch8g3074 . 10 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.6 2.3e-61 231.9
Mch2g0212 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.5 2.7e-49 191.8
Mch6g1777 . 30 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.8 5.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43538 PF04690 YABBY 1.20E-69 CL0114 Mch TF