Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0711 | ATGGCAAGCTGCATAGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACCAATTTGTGGTCCGTGAATATGGCTGCCGCGTTTCAGTCACTTTCCTGGCAAGATGTTCAGGTTCCAAACTACAATCTGTACAGTTGTAGCGGACCAGATTTTCAAGGTGATTTTGGTTCCTCCTCCAAATGTAACAACAATAAGATGGAAATTCGAGCTCCCACCACAATTCCAGCAGAGGAGAGAGTTGTGAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAATAATCCTGAGATTAGCCATAGGGAAGCTTTCAGTACAGCTGCCAAAAACTGGGCACACTTCCCTCGTATTCACTTTGGCCTAATGTTGGAAACCAACAATAATCAAGTGAAGCTAGATGATGGTTTGTCAAGGGCTGCACTATTAAACAAATGA | 564 | 43.97 | MASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNLYSCSGPDFQGDFGSSSKCNNNKMEIRAPTTIPAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNNQVKLDDGLSRAALLNK | 187 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4887665 | 4891117 | + | MC06g0595 | Mch6g0711 | 690158 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0711 | 187 | PANTHER | PROTEIN YABBY 6-RELATED | 9 | 174 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| Mch6g0711 | 187 | CDD | HMG-box_SF | 118 | 154 | - | - | |
| Mch6g0711 | 187 | SUPERFAMILY | HMG-box | 101 | 157 | IPR036910 | - | |
| Mch6g0711 | 187 | FunFam | axial regulator YABBY 5-like | 102 | 160 | - | - | |
| Mch6g0711 | 187 | Pfam | YABBY protein | 8 | 164 | IPR006780 | GO:0007275(InterPro) | |
| Mch6g0711 | 187 | Gene3D | High mobility group box domain | 104 | 159 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g1534 | Mch-Chr10:15271343 | Mch6g0711 | Mch-Chr6:4887665 | 2.79E-23 | dispersed | |
| Mch2g0212 | Mch-Chr2:1603611 | Mch6g0711 | Mch-Chr6:4887665 | 1.39E-55 | dispersed | |
| Mch6g0711 | Mch-Chr6:4887665 | Mch6g1777 | Mch-Chr6:20335000 | 3.41E-53 | dispersed | |
| Mch9g2062 | Mch-Chr9:21735622 | Mch6g0711 | Mch-Chr6:4887665 | 9.75E-39 | transposed | |
| Mch6g0711 | Mch-Chr6:4887665 | Mch8g3074 | Mch-Chr8:33217996 | 1.53E-89 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43538 | PF04690 | YABBY | 1.20E-69 | CL0114 | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch6g0711 | K25796 | - | csv:101215951 | 352.829 |