Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0715 | ATGAAGCGGCCGTCCAGAAAAGTTGGGAAGTATGAGGTTGGGCGGACTGTTGGCGAGGGAACGTTCGCCAAGGTTAAGTTTGCACGTAACACGGAAACGGGGGAGAGTGTGGCCATGAAAGTTTTGGCCAAAAGCAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCGATAATGAAAATTGTGAGGCATCCACATATTGTCAGATTGCTTGAGGTGTTGGCTAGCCAAACAAAGATATATATTATTCTCGAGTTTGTCACTGGAGGTGAACTATATGATACAATAGTTCTTCAAAAGAAGCTTCCAGAAATGGAGTCTAGACGATACTTTCAACAACTGGTAGATGCCGTTGCTCATTGTCACAGCAAGGGTGTGTACCATAGGGACCTTAAGCCTGAAAACCTCCTTCTTGATGCTGATGGAAATCTGAAGGTTTCCGACTTTGGACTGAGTGCGCTGTCTCAACAAGGCATTGAGCTACTTCATACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGTGCTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTTATCCTCTTTGTACTAATGGCTGGATATCTTCCATTCTCAGAGACGGACCTTCCCACTTTATACAAGAAGATAAATGCAGCAGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCAAATCCCACAAATCGGATTCGAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATCCCTGCTAAACTAGGAGAAGATGAGGAAGTAACCTTGGACGACGTTCGTGCTGTTTTTGATGACATTGAGGAAGAATATGTAGCTGATCAGTCAGATAAAAGTGATGACGGTCCTTTACTAATGAATGCATTTGAGATGATAACATTATCTCAAGGATTAAATCTGTCACCGTTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTCGTTTCTCAAAAACCTGCTAACATTATTATGTCTACCATGGAAGCCGTAGCAGAAGCAATGGGTCTAAACGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACAGGACATAAGGTTGGACAGTTTGCAGCTGTACTGGAGATTTATGAAGTGGCCCCATCACTTTTTATGGTGGATGTTCGCAAGGCTGCTGGAGATACTCTAGAATATCACAAGTTCTACAAAAAATTCTGTGGTAACCTAGAAAACATAATCTGGAAACCATCA | 1296 | 42.67 | MKRPSRKVGKYEVGRTVGEGTFAKVKFARNTETGESVAMKVLAKSSILKHKMVEQIKREISIMKIVRHPHIVRLLEVLASQTKIYIILEFVTGGELYDTIVLQKKLPEMESRRYFQQLVDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGIELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILFVLMAGYLPFSETDLPTLYKKINAAEYSCPYWFSSGAKSLIQKILDPNPTNRIRIEEIRKDPWFRRNYIPAKLGEDEEVTLDDVRAVFDDIEEEYVADQSDKSDDGPLLMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSQKPANIIMSTMEAVAEAMGLNVHTRNFKTRLERRTGHKVGQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKKFCGNLENIIWKPS | 432 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4914990 | 4919898 | + | MC06g0599 | Mch6g0715 | 690162 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0715 | 432 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch6g0715 | 432 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 299 | IPR011009 | - | |
| Mch6g0715 | 432 | CDD | CIPK_C | 311 | 421 | - | - | |
| Mch6g0715 | 432 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 49 | IPR017441 | GO:0005524(InterPro) | |
| Mch6g0715 | 432 | FunFam | Non-specific serine/threonine protein kinase | 2 | 90 | - | - | |
| Mch6g0715 | 432 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 90 | - | - | |
| Mch6g0715 | 432 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 272 | - | - | |
| Mch6g0715 | 432 | ProSiteProfiles | NAF domain profile. | 305 | 329 | IPR018451 | GO:0007165(InterPro) | |
| Mch6g0715 | 432 | Pfam | NAF domain | 307 | 366 | IPR004041 | GO:0007165(InterPro) | |
| Mch6g0715 | 432 | FunFam | Non-specific serine/threonine protein kinase | 304 | 430 | - | - | |
| Mch6g0715 | 432 | FunFam | Non-specific serine/threonine protein kinase | 4 | 305 | - | - | |
| Mch6g0715 | 432 | Gene3D | Kinase associated domain 1, KA1 | 304 | 430 | - | - | |
| Mch6g0715 | 432 | SMART | serkin_6 | 11 | 264 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch6g0715 | 432 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 3 | 415 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
| Mch6g0715 | 432 | Pfam | Protein kinase domain | 11 | 264 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch6g0715 | 432 | ProSiteProfiles | Protein kinase domain profile. | 11 | 264 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g0519 | Mch-Chr5:3443746 | Mch6g0715 | Mch-Chr6:4914990 | 8.64E-174 | dispersed | |
| Mch5g0812 | Mch-Chr5:5661905 | Mch6g0715 | Mch-Chr6:4914990 | 8.52E-126 | dispersed | |
| Mch6g0631 | Mch-Chr6:4301878 | Mch6g0715 | Mch-Chr6:4914990 | 1.38E-130 | dispersed | |
| Mch6g0715 | Mch-Chr6:4914990 | Mch8g2989 | Mch-Chr8:32521646 | 4.38E-136 | dispersed | |
| Mch8g3186 | Mch-Chr8:34037596 | Mch6g0715 | Mch-Chr6:4914990 | 5.69E-23 | dispersed | |
| Mch9g0976 | Mch-Chr9:8135716 | Mch6g0715 | Mch-Chr6:4914990 | 2.03E-33 | dispersed | |
| Mch6g0715 | Mch-Chr6:4914990 | Mch8g0293 | Mch-Chr8:2023557 | 1.51E-206 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77476 | PF00069 | Pkinase | 1.80E-72 | CL0016 | Mch | PK |
Pathway information