Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0721 ATGGCCAAATTAAAGAAGTTCAGAGGTGTCAGACAGCGCCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCATTACTGAAGAGGAGGATATGGCTGGGAACCTTCGAGACCGCAGAGGAAGCGGCGAGAGCGTACGATGAGGCCGCGGTCTTGATGAGTGGTCGAAACGCCAAAACCAACTTTCCCACGGCCCAAGCTCCCGATGGAGACACCCACATTGTCCCAACCAAGGATGATGCGCCCAAGGGCTTGTCCCAAATGCTGCAGGCCAAGCTCAAGAAATGGCGCTGCCGTGCCCCATCCCCGTCGATGACTTGCTTGAGGCTCGACACTGAGAACTCGAACATCGGCGTGTGGCACAAGTGTGCCGGGCAGCAGTCGGCTTCAAACTGGGTCATGACTGTCGAGCTTGGAAATAGCAACAACAAGAACCATGTTGTCCATGGCAATGCAGATTCTCCGACCGGGGCTGTGGTGGCTTGCGATCAGTCTCGAGCCACTGCAGTGGCAGCGTCGTCGGAGATTCGATCAGAGTTGGATGAAGAAGAGAGAATGGTGGCGTTGCAAATGGTGGAGGAACTGCTTCACATCAATTGTGATGATTTTCTCGACCAACCGTTTGAGATTGAACAAGGAAACCAAAATTACGTTTAA 657 53.12 MAKLKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPTAQAPDGDTHIVPTKDDAPKGLSQMLQAKLKKWRCRAPSPSMTCLRLDTENSNIGVWHKCAGQQSASNWVMTVELGNSNNKNHVVHGNADSPTGAVVACDQSRATAVAASSEIRSELDEEERMVALQMVEELLHINCDDFLDQPFEIEQGNQNYV 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4958144 4959277 + MC06g0605 Mch6g0721 690168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0721 218 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0721 218 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 136 IPR050913 -
Mch6g0721 218 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0721 218 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0721 218 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0721 218 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Mch6g0721 218 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Mch6g0721 218 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0721 218 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0721 218 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0721 Mch-Chr6:4958144 Mch8g0487 Mch-Chr8:3421508 2.72E-29 dispersed
Mch11g0559 Mch-Chr11:3591294 Mch6g0721 Mch-Chr6:4958144 1.27E-62 wgd
Mch6g0721 Mch-Chr6:4958144 Mch8g3079 Mch-Chr8:33261065 1.83E-66 wgd
Mch6g0721 Mch-Chr6:4958144 Mch8g1129 Mch-Chr8:8077157 7.06E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43539 PF00847 AP2 5.40E-12 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0721 - - - 0.0