Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0789 ATCAGCCCCATTTTCGACCTTTCACTCCTCCTCCTTCTTCCCGCCTTCCTCCGCCTCGCCGCCGCCGCCGTCGGCCATGGCAGCCTCTCCGACGCCGAAGCTCTCTACATCCGGCAGCGCCAGCTTCTGTACTACAGAGACGAGTTCGGTGACCGCGGCGAAGAAGTCACGGTGGACCCCTCTCTGCGCTTCGAAAACCAAAGAATCAGAGATGCTTACATTGCGCTTCAGGCTTGGAAACTCGCCATTTTGTCCGACCCCCTAAATCAAACCGCTGATTGGGTCGGATCCGATGTCTGCACCTACACCGGCGTTTACTGTGCGCCCGCATTGGACGATCCTACCATCCGTACCGTCGCCGGCATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCGGAGGAGCTCGGTCTTCTGACGGATCTCGCATTGTTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACAAATTTGACCGCCTCAAGCTGCTCTACGAGTTGGATCTCAGCAACAATCGGTTCGCCGGCAAGTTTCCCGACGTGGTCCTCAAGCTTCCGACGCTCAAGTTTTTGGATCTGAGATTTAACGAATTTGAAGGCGGTGTACCCAGAGAACTGTTCGACAAAGATTTGGACGCTATTTTTATTAACCACAACAGGTTCAGATTCGAGCTGCCGGATAATTTCGGGAACTCGCCGGTGTCGGTCATCGTCCTCGCCAATAACAAGTTCCACGGGTGTTTGCCGGCCAGCTTGGGCAATATGACGAGGCTGAATGAGATTATTTTGATGAATAACGGGCTTAACTCTTGCTTGCCGCGGGGAATTGGGTCGTTGAAGAACTTGACGGTGTTCGATGTCAGTTCCAATAAATTGGTGGGTCCGTTGCCGGAGACATTTGGGGGACTGGTGAGTTTGGAGCAACTCAATGTGGCTAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATCTGTGATTTGCCTAAGCTCCAGAACTTTACGTTCTCGAATAATTTCTTCACCGGTGAACCGCCGGCGTGTTTGGGGGTTCCGGATTCGGATGAACGGAGAAATTGTTTGCCCGGAAGGCCGGAGCAGCGGCCTAGTGGACAATGTAATTCGTTTTTGTCGAAGCCTGTGGATTGTAATGCGTTTAAATGCATTTCTTCTTCCGTTTCCCCTTCTCCAACTCCACCGGTGACCTCGCCTCCAGTGATTTCGCCGGCGCCTCGGCCGGTTGTTTCCCCCTCGTCGCCTCCTTCACCGGCGCCGTCTCATTCTCGCAATTCACCGCCAGCTCCACCGTTTTCGCCCCATTTTCCTCCTCTGCCGCCACAATCGCCGCTGGCACCGCCTTTGTCCCCCTCTCCACCCTCTACTTCTCAGCCGCCATCACCGCCGCTAGTTTCTTCTCCGACATCGCCTCCTTCACCGCCGTCTACATCTACAACCCCTTCATCCCCTCCAACTCCACCCCATCTTCCCTCTCTGCCGGCGCCGTCGCCTTCCTCGCCGCCGCAAGGTCATGCTCCGCCGGTATTACCCACGCCGTCTGTTCCATCACCTCCGTCGCCGCCTCAAGGTCTTACACCGCCGGCATTGCCCTCTCCATCGGCGCCGTCACCATCATCGCCGCCTCAAGGTCACACTCCGCCGTCACAGCCTTCGTCGCCGCCACAAGGTCATACTCCGCCGGCTCCACCTTCAGCGTCCGAGCCCTCACCTTCATCGCCGCCACAAGGCCACATTCCGCCGGCTCCACCTTCGGCGTCCGAGCCCTCACCTTCATCGCCGCCGCAAGGTCACACTCCCCCGGCTCAGCCTTCACCTCCT 1842 56.95 ISPIFDLSLLLLLPAFLRLAAAAVGHGSLSDAEALYIRQRQLLYYRDEFGDRGEEVTVDPSLRFENQRIRDAYIALQAWKLAILSDPLNQTADWVGSDVCTYTGVYCAPALDDPTIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFDRLKLLYELDLSNNRFAGKFPDVVLKLPTLKFLDLRFNEFEGGVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCLPASLGNMTRLNEIILMNNGLNSCLPRGIGSLKNLTVFDVSSNKLVGPLPETFGGLVSLEQLNVANNFLSGKIPESICDLPKLQNFTFSNNFFTGEPPACLGVPDSDERRNCLPGRPEQRPSGQCNSFLSKPVDCNAFKCISSSVSPSPTPPVTSPPVISPAPRPVVSPSSPPSPAPSHSRNSPPAPPFSPHFPPLPPQSPLAPPLSPSPPSTSQPPSPPLVSSPTSPPSPPSTSTTPSSPPTPPHLPSLPAPSPSSPPQGHAPPVLPTPSVPSPPSPPQGLTPPALPSPSAPSPSSPPQGHTPPSQPSSPPQGHTPPAPPSASEPSPSSPPQGHIPPAPPSASEPSPSSPPQGHTPPAQPSPP 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5485973 5487814 - MC06g0663 Mch6g0789 690236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0789 614 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 495 IPR051582 -
Mch6g0789 614 Pfam Leucine rich repeat N-terminal domain 75 107 IPR013210 -
Mch6g0789 614 PRINTS Proline rich extensin signature 390 402 - -
Mch6g0789 614 PRINTS Proline rich extensin signature 423 439 - -
Mch6g0789 614 PRINTS Proline rich extensin signature 443 460 - -
Mch6g0789 614 PRINTS Proline rich extensin signature 461 486 - -
Mch6g0789 614 PRINTS Proline rich extensin signature 402 423 - -
Mch6g0789 614 Gene3D Ribonuclease Inhibitor 72 359 IPR032675 -
Mch6g0789 614 MobiDBLite consensus disorder prediction 394 614 - -
Mch6g0789 614 FunFam Leucine-rich repeat extensin-like protein 1 73 234 - -
Mch6g0789 614 Pfam Leucine Rich Repeat 167 185 IPR001611 GO:0005515(InterPro)
Mch6g0789 614 MobiDBLite consensus disorder prediction 399 614 - -
Mch6g0789 614 Pfam Leucine rich repeat 284 341 IPR001611 GO:0005515(InterPro)
Mch6g0789 614 SUPERFAMILY L domain-like 81 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0146 Mch-Chr4:976904 Mch6g0789 Mch-Chr6:5485973 1.48E-32 dispersed
Mch6g0789 Mch-Chr6:5485973 Mch6g0871 Mch-Chr6:6054851 1.36E-18 dispersed
Mch7g0650 Mch-Chr7:11166773 Mch6g0789 Mch-Chr6:5485973 2.53E-47 transposed
Mch5g0563 Mch-Chr5:3807556 Mch6g0789 Mch-Chr6:5485973 2.23E-49 wgd
Mch6g0789 Mch-Chr6:5485973 Mch8g3134 Mch-Chr8:33665246 3.35E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0789 - - - 0.0