Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0818 ATGGGGGAAGTTGAGAATCGGGAGATGGATAATTTGGCCCCGTCAAATGCTCAAACTGATAGTGCGGAACCGGGTAACGTGGTTTCATCTGACGTTCCTGCTAAGAAACTAGCCAGGCAGCTGGATTTTACGAGTTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGTCTCAGTCTCAGTCTCGGTGTCAATCAGAGTCGCAGGCCGTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAACATTTGATGGTTTTGCCCATTGGAACACAAGCACCTCATTCTGTGAGAAAGCCAGATTCTCCGAAGTCGAGATCAAGATCTGTTGAAACAAAGGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTTTATTGTGAGTGCTTCGCATCTGGAATATATTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTTGAGAATGAAGCTTCTAGAAGAGAAGCAGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCAAGCAGTCCACATGGAACACGAGAGAACAGGGATGAGATTGGAGAGGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGACAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGTGACCACGTCAACAATATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCATGCCTTCAAATTCCAAAGAAAAGGAAAGGCCAAGAGCTGTGCTTTGGGCCTACGGGGAAGGATCCTCCCCTCAACAGCATGCCACAATTTCATCAGGCTAATAATATAATGTCTTCTGGCACTTCTACATCATCTTCCCTCCCTTTTGGTCATGTTGGCAGCTCGGCAGCACCAGGGCCTTCAAAGTTTTCGTTCAGGTCCTTATTAGCAGACCTCATCCAGCCGCAGGACCTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGACTATAGCAGGACAAAGAATTTCTGAGAAGCAGATAATTGATCCACTACAAATTTCCCTTGCTTCATCAACTGAAGATAGGTCACAGCATCAGAAGGCAGATGAGAAAGCTGAAGATGGCGAGCGTGGAAGTACAAACGAAGGTGATAGAATTGTAAATGATAATTCCAATTCAGATAGTTCGGATCTGACAAGAGCAAGGCCAATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACGCGATACAATGTTCATGAGAGCTTCTCCAGCCAATGGGTTGGCAGGCCATGGTTGCAACACGTCATCACATGTGCCTGATAAGTCTGCGTCAGAAGTCTATGTAGAACAGGAAAATATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGCGAGATAAAAGAAAGAAATTTCACTTCCAGAAGCGAAGCGAAGAATGAAAATCATAGCAGCACCTCAAATGGCGGTTGCCAACAGAGAACCATTAGCAATGGGGTCGGGAAGAACGTCACTCTCTCGGCACCCAGAATACCACCATTTGGAACAGTAGCTCGTCGTCCTAACGATTTGCCCCCCAAAATCCTACCCCTTCCTGAAAATGGTAAGAGTAAACGACAAGTTGACAGAGAACTATAG 1782 44.95 MGEVENREMDNLAPSNAQTDSAEPGNVVSSDVPAKKLARQLDFTSFGGAVLPEHPHFQSQSQSRCQSESQAVMVVQSQSQPKSPQHLMVLPIGTQAPHSVRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVEATLERNPNAFRPKIASSPHGTRENRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHVNNMAYIQQAANAAITGAIGSSGYACLQIPKKRKGQELCFGPTGKDPPLNSMPQFHQANNIMSSGTSTSSSLPFGHVGSSAAPGPSKFSFRSLLADLIQPQDLKELCSVLVVLSSEAAKTIAGQRISEKQIIDPLQISLASSTEDRSQHQKADEKAEDGERGSTNEGDRIVNDNSNSDSSDLTRARPMSPGTLALMCDERDTMFMRASPANGLAGHGCNTSSHVPDKSASEVYVEQENIVLTKFRDCLNKLITLGEIKERNFTSRSEAKNENHSSTSNGGCQQRTISNGVGKNVTLSAPRIPPFGTVARRPNDLPPKILPLPENGKSKRQVDREL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5677047 5683444 - MC06g0691 Mch6g0818 690265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0818 593 MobiDBLite consensus disorder prediction 397 445 - -
Mch6g0818 593 SMART CXC_2 206 247 IPR033467 -
Mch6g0818 593 SMART CXC_2 121 161 IPR033467 -
Mch6g0818 593 MobiDBLite consensus disorder prediction 1 33 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 521 593 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 526 552 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 93 116 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 404 425 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 11 26 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 102 116 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 426 444 - -
Mch6g0818 593 PANTHER TESMIN/TSO1-RELATED 51 519 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch6g0818 593 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Mch6g0818 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Mch6g0818 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0566 Mch-Chr5:3831501 Mch6g0818 Mch-Chr6:5677047 4.76E-31 transposed
Mch7g1046 Mch-Chr7:14572056 Mch6g0818 Mch-Chr6:5677047 1.79E-35 transposed
Mch8g1146 Mch-Chr8:8161049 Mch6g0818 Mch-Chr6:5677047 4.62E-09 transposed
Mch6g0818 Mch-Chr6:5677047 Mch8g3154 Mch-Chr8:33805255 2.29E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43547 PF03638 TCR 2.90E-12 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0818 - - - 0.0