Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0818 ATGGGGGAAGTTGAGAATCGGGAGATGGATAATTTGGCCCCGTCAAATGCTCAAACTGATAGTGCGGAACCGGGTAACGTGGTTTCATCTGACGTTCCTGCTAAGAAACTAGCCAGGCAGCTGGATTTTACGAGTTTTGGTGGTGCAGTCTTGCCAGAGCACCCTCATTTTCAGTCTCAGTCTCAGTCTCGGTGTCAATCAGAGTCGCAGGCCGTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAACATTTGATGGTTTTGCCCATTGGAACACAAGCACCTCATTCTGTGAGAAAGCCAGATTCTCCGAAGTCGAGATCAAGATCTGTTGAAACAAAGGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTTTATTGTGAGTGCTTCGCATCTGGAATATATTGTGATGGTTGCAATTGTGCAAATTGCTATAACAATGTTGAGAATGAAGCTTCTAGAAGAGAAGCAGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCAAGCAGTCCACATGGAACACGAGAGAACAGGGATGAGATTGGAGAGGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGACAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGTGACCACGTCAACAATATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCATGCCTTCAAATTCCAAAGAAAAGGAAAGGCCAAGAGCTGTGCTTTGGGCCTACGGGGAAGGATCCTCCCCTCAACAGCATGCCACAATTTCATCAGGCTAATAATATAATGTCTTCTGGCACTTCTACATCATCTTCCCTCCCTTTTGGTCATGTTGGCAGCTCGGCAGCACCAGGGCCTTCAAAGTTTTCGTTCAGGTCCTTATTAGCAGACCTCATCCAGCCGCAGGACCTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTATCAAGTGAAGCTGCCAAGACTATAGCAGGACAAAGAATTTCTGAGAAGCAGATAATTGATCCACTACAAATTTCCCTTGCTTCATCAACTGAAGATAGGTCACAGCATCAGAAGGCAGATGAGAAAGCTGAAGATGGCGAGCGTGGAAGTACAAACGAAGGTGATAGAATTGTAAATGATAATTCCAATTCAGATAGTTCGGATCTGACAAGAGCAAGGCCAATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACGCGATACAATGTTCATGAGAGCTTCTCCAGCCAATGGGTTGGCAGGCCATGGTTGCAACACGTCATCACATGTGCCTGATAAGTCTGCGTCAGAAGTCTATGTAGAACAGGAAAATATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGCGAGATAAAAGAAAGAAATTTCACTTCCAGAAGCGAAGCGAAGAATGAAAATCATAGCAGCACCTCAAATGGCGGTTGCCAACAGAGAACCATTAGCAATGGGGTCGGGAAGAACGTCACTCTCTCGGCACCCAGAATACCACCATTTGGAACAGTAGCTCGTCGTCCTAACGATTTGCCCCCCAAAATCCTACCCCTTCCTGAAAATGGTAAGAGTAAACGACAAGTTGACAGAGAACTATAG 1782 44.95 MGEVENREMDNLAPSNAQTDSAEPGNVVSSDVPAKKLARQLDFTSFGGAVLPEHPHFQSQSQSRCQSESQAVMVVQSQSQPKSPQHLMVLPIGTQAPHSVRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCANCYNNVENEASRREAVEATLERNPNAFRPKIASSPHGTRENRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHVNNMAYIQQAANAAITGAIGSSGYACLQIPKKRKGQELCFGPTGKDPPLNSMPQFHQANNIMSSGTSTSSSLPFGHVGSSAAPGPSKFSFRSLLADLIQPQDLKELCSVLVVLSSEAAKTIAGQRISEKQIIDPLQISLASSTEDRSQHQKADEKAEDGERGSTNEGDRIVNDNSNSDSSDLTRARPMSPGTLALMCDERDTMFMRASPANGLAGHGCNTSSHVPDKSASEVYVEQENIVLTKFRDCLNKLITLGEIKERNFTSRSEAKNENHSSTSNGGCQQRTISNGVGKNVTLSAPRIPPFGTVARRPNDLPPKILPLPENGKSKRQVDREL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5677047 5683444 - MC06g0691 Mch6g0818 690265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0818 593 MobiDBLite consensus disorder prediction 397 445 - -
Mch6g0818 593 SMART CXC_2 206 247 IPR033467 -
Mch6g0818 593 SMART CXC_2 121 161 IPR033467 -
Mch6g0818 593 MobiDBLite consensus disorder prediction 1 33 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 521 593 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 526 552 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 93 116 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 404 425 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 11 26 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 102 116 - -
Mch6g0818 593 MobiDBLite consensus disorder prediction 426 444 - -
Mch6g0818 593 PANTHER TESMIN/TSO1-RELATED 51 519 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch6g0818 593 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Mch6g0818 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Mch6g0818 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0818 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0566 Mch-Chr5:3831501 Mch6g0818 Mch-Chr6:5677047 4.76E-31 transposed
Mch7g1046 Mch-Chr7:14572056 Mch6g0818 Mch-Chr6:5677047 1.79E-35 transposed
Mch8g1146 Mch-Chr8:8161049 Mch6g0818 Mch-Chr6:5677047 4.62E-09 transposed
Mch6g0818 Mch-Chr6:5677047 Mch8g3154 Mch-Chr8:33805255 2.29E-214 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g3154 . 93 519 CPP Transcription Factor Family AT2G20110 61.6 4.4e-141 498.4
Mch6g0818 . 102 548 CPP Transcription Factor Family AT2G20110 54.7 8.0e-127 451.1
Mch8g3154 . 90 526 CPP Transcription Factor Family AT4G29000 64.6 1.6e-155 546.6
Mch6g0818 . 103 550 CPP Transcription Factor Family AT4G29000 58.5 4.8e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43547 PF03638 TCR 2.90E-12 No_clan Mch TF