Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0844 ATTGAGAATGATCAGCCGGCGGCGTCGTCGTCGTCTTCTTCCTCTTCTTCTTCACCGCCTTCGCCGTCCACGTCGTCCGGGGCGGCGGTCGGGTCCAACCGGAAACGGCCACGGGAGACTAGTGGTAATAACAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGGATGCGGGCGTGGGGGAAATGGGTATCCGAAATCCGCGAGCCCCGAAAGAAGAGCCGGATCTGGCTGGGGACTTTCTCCACGCCAGAAATGGCGGCGCGTGCCCACGACGTGGCTGCCCTCACCATTAAAGGAAACTCCGCGATTCTCAACTTCCCGGAACTCGCCGATCAATTCCCACGACCCGCGTCCAACTCGCCCCGAGATGTACAGGCCGCCGCCGCCAAGGCCGCCTCCATGGAAATAACCCCAAACCCCTCTTCCTCTTCCTCTTCCTCTGCTCTGTGCCCGGAGGAGCTGAGTCAAATCGTGGAGCTACCGAGTCTGGGGACGAGTTACGAAACGGCCGAGTTGGGGAACGAGTTCGTATTCGTCGACTCAGTGGAGGGGTGGCTCTACTCATACCCCTGGTACCACAGAGTAAATGCGAATGTGGATCAGGAAGACGATTATGGGTCGTTGTTCACAGACCAAATATTAATGGCGGAAGATACAACTGCCTTTGAGGCTTTCTTGTGGCAACAC 687 58.08 IENDQPAASSSSSSSSSSPPSPSTSSGAAVGSNRKRPRETSGNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEITPNPSSSSSSSALCPEELSQIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYHRVNANVDQEDDYGSLFTDQILMAEDTTAFEAFLWQH 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5837127 5837813 + MC06g0713 Mch6g0844 690291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0844 229 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Mch6g0844 229 CDD AP2 51 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 MobiDBLite consensus disorder prediction 1 52 - -
Mch6g0844 229 Pfam AP2 domain 49 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 SMART rav1_2 50 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 177 IPR051032 -
Mch6g0844 229 MobiDBLite consensus disorder prediction 1 48 - -
Mch6g0844 229 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0844 229 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0770 Mch-Chr11:5196917 Mch6g0844 Mch-Chr6:5837127 1.04E-54 dispersed
Mch11g1841 Mch-Chr11:18123578 Mch6g0844 Mch-Chr6:5837127 1.06E-32 dispersed
Mch6g0844 Mch-Chr6:5837127 Mch8g0335 Mch-Chr8:2362414 1.78E-46 dispersed
Mch6g0844 Mch-Chr6:5837127 Mch8g3167 Mch-Chr8:33895417 3.05E-72 wgd
Mch6g0844 Mch-Chr6:5837127 Mch8g1202 Mch-Chr8:8570775 2.22E-46 wgd
Mch6g0844 Mch-Chr6:5837127 Mch9g0319 Mch-Chr9:2386528 1.32E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43550 PF00847 AP2 1.80E-13 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0844 K09286 - csv:101219745 308.145