Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g0844 | ATTGAGAATGATCAGCCGGCGGCGTCGTCGTCGTCTTCTTCCTCTTCTTCTTCACCGCCTTCGCCGTCCACGTCGTCCGGGGCGGCGGTCGGGTCCAACCGGAAACGGCCACGGGAGACTAGTGGTAATAACAACAGCAAGCACCCGGTTTTCCGTGGGGTCCGGATGCGGGCGTGGGGGAAATGGGTATCCGAAATCCGCGAGCCCCGAAAGAAGAGCCGGATCTGGCTGGGGACTTTCTCCACGCCAGAAATGGCGGCGCGTGCCCACGACGTGGCTGCCCTCACCATTAAAGGAAACTCCGCGATTCTCAACTTCCCGGAACTCGCCGATCAATTCCCACGACCCGCGTCCAACTCGCCCCGAGATGTACAGGCCGCCGCCGCCAAGGCCGCCTCCATGGAAATAACCCCAAACCCCTCTTCCTCTTCCTCTTCCTCTGCTCTGTGCCCGGAGGAGCTGAGTCAAATCGTGGAGCTACCGAGTCTGGGGACGAGTTACGAAACGGCCGAGTTGGGGAACGAGTTCGTATTCGTCGACTCAGTGGAGGGGTGGCTCTACTCATACCCCTGGTACCACAGAGTAAATGCGAATGTGGATCAGGAAGACGATTATGGGTCGTTGTTCACAGACCAAATATTAATGGCGGAAGATACAACTGCCTTTGAGGCTTTCTTGTGGCAACAC | 687 | 58.08 | IENDQPAASSSSSSSSSSPPSPSTSSGAAVGSNRKRPRETSGNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEITPNPSSSSSSSALCPEELSQIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYHRVNANVDQEDDYGSLFTDQILMAEDTTAFEAFLWQH | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5837127 | 5837813 | + | MC06g0713 | Mch6g0844 | 690291 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g0844 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 49 | 108 | - | - | |
Mch6g0844 | 229 | CDD | AP2 | 51 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Mch6g0844 | 229 | Pfam | AP2 domain | 49 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | SMART | rav1_2 | 50 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 23 | 177 | IPR051032 | - | |
Mch6g0844 | 229 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Mch6g0844 | 229 | Gene3D | AP2/ERF domain | 50 | 108 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | PRINTS | Ethylene responsive element binding protein signature | 73 | 89 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch6g0844 | 229 | SUPERFAMILY | DNA-binding domain | 50 | 108 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0770 | Mch-Chr11:5196917 | Mch6g0844 | Mch-Chr6:5837127 | 1.04E-54 | dispersed | |
Mch11g1841 | Mch-Chr11:18123578 | Mch6g0844 | Mch-Chr6:5837127 | 1.06E-32 | dispersed | |
Mch6g0844 | Mch-Chr6:5837127 | Mch8g0335 | Mch-Chr8:2362414 | 1.78E-46 | dispersed | |
Mch6g0844 | Mch-Chr6:5837127 | Mch8g3167 | Mch-Chr8:33895417 | 3.05E-72 | wgd | |
Mch6g0844 | Mch-Chr6:5837127 | Mch8g1202 | Mch-Chr8:8570775 | 2.22E-46 | wgd | |
Mch6g0844 | Mch-Chr6:5837127 | Mch9g0319 | Mch-Chr9:2386528 | 1.32E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43550 | PF00847 | AP2 | 1.80E-13 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch6g0844 | K09286 | - | csv:101219745 | 308.145 |