Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0862 ATGGGGAGGGCGTCGAGGTGGCTCAAGAACTTGTTCGGGATTAAGAAAGAGAAAGCACCCACCAGAGAAAATTCCGTCGCCGGCGTCAGGAAAGAGAAGAATCCCACTTCCAATTTCGCCGGAAACTCCGAACTCTGCAACAATCCGGCCACAATCCCGCCGAATTTGTCGGCGGCCGAGGCCGCTTGGCTGAAGTCCTTTTACTCGGAAACAGAGAAGGAGCAGAGCAAACATGCGATTGCGGTGGCTGCAGCCACCGCGGCCGCCGCCGATGCCGCAGTTGCCGCAGCGCAAGCCGCCGTGGCGGTGGTCCGGCTCACCAGCCACGGCAGAGGCACTATGTTCGTCGGCGGCGGCCGGGAAAGATGGGCTTCTGTGAAGATTCAGACTTGTTTCAGAGGGTATCTGGCCAGGAAAGCTCTGCGAGCTCTTAAAGGATTGGTGAAATTACAGGCCCTTGTGAGAGGGTATTTAGTTCGAAAACAGGCTACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGCTCAAGCCACGGTTCGATCTCAGAGAAATCGCAGACTTGTAAACGACGAAATTATTAATAACAGACCTGAATTCCGAGCCCGGAAATCCACGGAGAGATTTGATGACACTAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGGCTCTCTGCTACTTTAGACACAGCATTTACCGCGCTCGAAGAAAGCCCCAAAATCGTGGAAATGGACACCGGCCGGCCCAAGTCGTGGTCTCGCCGGACGAACACGTCGGCATCGGAATTGGGGGACGACCCATTTCACCAGGCGCTCTCCTCTCCACTCCCTTGCCGGACGCCGTCGCGTCTACAGATCCCAGATTGCCGGAATTTCCAGGATTCCGATTGGGGTCTCGCCGGCGACGAATGTCGATTGATCTCCACGGCGCAGAGCACTCCACGATTCATCAGCTCTGGCGGATCCAACGGTGTGGTGACGCCGGCGAAGAGTATGTGTGCGGACAATTTCTTCAGAGGGTACCTAAATTTCCCGAACTACATGGCGAATACGCAGTCGTTTAAGGCGAAATTGAGGTCCCACAGCGCTCCGAAACAGAGGCCGGAGCCGGGAACGAAGAAGAGGCTTTCGCTGAACGAATTGATGGAATCTCGGAGCAGCCTCAGCGGCGTTCGGATGCAGAGGTCGTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTGGACAGGCCCTCAGAATGCCAATTGCAGAGAAGATTATGA 1284 54.36 MGRASRWLKNLFGIKKEKAPTRENSVAGVRKEKNPTSNFAGNSELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFVGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRNRRLVNDEIINNRPEFRARKSTERFDDTKSEHTASVHSRRLSATLDTAFTALEESPKIVEMDTGRPKSWSRRTNTSASELGDDPFHQALSSPLPCRTPSRLQIPDCRNFQDSDWGLAGDECRLISTAQSTPRFISSGGSNGVVTPAKSMCADNFFRGYLNFPNYMANTQSFKAKLRSHSAPKQRPEPGTKKRLSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSECQLQRRL 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5996478 5998319 + MC06g0728 Mch6g0862 690309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0862 427 PANTHER IQ-DOMAIN 5-RELATED 6 396 - -
Mch6g0862 427 MobiDBLite consensus disorder prediction 22 44 - -
Mch6g0862 427 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515(InterPro)
Mch6g0862 427 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515(InterPro)
Mch6g0862 427 ProSiteProfiles IQ motif profile. 145 172 - -
Mch6g0862 427 Pfam Protein of unknown function (DUF4005) 323 391 IPR025064 -
Mch6g0862 427 MobiDBLite consensus disorder prediction 245 270 - -
Mch6g0862 427 ProSiteProfiles IQ motif profile. 121 149 - -
Mch6g0862 427 MobiDBLite consensus disorder prediction 30 44 - -
Mch6g0862 427 Gene3D - 118 169 - -
Mch6g0862 427 SMART iq_5 120 142 IPR000048 GO:0005515(InterPro)
Mch6g0862 427 SMART iq_5 143 164 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0862 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0862 Mch-Chr6:5996478 Mch7g1041 Mch-Chr7:14536644 2.90E-24 dispersed
Mch3g0249 Mch-Chr3:3450578 Mch6g0862 Mch-Chr6:5996478 6.43E-13 transposed
Mch6g0862 Mch-Chr6:5996478 Mch8g1216 Mch-Chr8:8718339 5.25E-78 wgd
Mch6g0862 Mch-Chr6:5996478 Mch9g0298 Mch-Chr9:2216351 1.20E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37