Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0862 ATGGGGAGGGCGTCGAGGTGGCTCAAGAACTTGTTCGGGATTAAGAAAGAGAAAGCACCCACCAGAGAAAATTCCGTCGCCGGCGTCAGGAAAGAGAAGAATCCCACTTCCAATTTCGCCGGAAACTCCGAACTCTGCAACAATCCGGCCACAATCCCGCCGAATTTGTCGGCGGCCGAGGCCGCTTGGCTGAAGTCCTTTTACTCGGAAACAGAGAAGGAGCAGAGCAAACATGCGATTGCGGTGGCTGCAGCCACCGCGGCCGCCGCCGATGCCGCAGTTGCCGCAGCGCAAGCCGCCGTGGCGGTGGTCCGGCTCACCAGCCACGGCAGAGGCACTATGTTCGTCGGCGGCGGCCGGGAAAGATGGGCTTCTGTGAAGATTCAGACTTGTTTCAGAGGGTATCTGGCCAGGAAAGCTCTGCGAGCTCTTAAAGGATTGGTGAAATTACAGGCCCTTGTGAGAGGGTATTTAGTTCGAAAACAGGCTACAGCAACTCTTCACAGTATGCAAGCTTTAATCAGAGCTCAAGCCACGGTTCGATCTCAGAGAAATCGCAGACTTGTAAACGACGAAATTATTAATAACAGACCTGAATTCCGAGCCCGGAAATCCACGGAGAGATTTGATGACACTAAAAGCGAACACACAGCTTCAGTACACAGCAGAAGGCTCTCTGCTACTTTAGACACAGCATTTACCGCGCTCGAAGAAAGCCCCAAAATCGTGGAAATGGACACCGGCCGGCCCAAGTCGTGGTCTCGCCGGACGAACACGTCGGCATCGGAATTGGGGGACGACCCATTTCACCAGGCGCTCTCCTCTCCACTCCCTTGCCGGACGCCGTCGCGTCTACAGATCCCAGATTGCCGGAATTTCCAGGATTCCGATTGGGGTCTCGCCGGCGACGAATGTCGATTGATCTCCACGGCGCAGAGCACTCCACGATTCATCAGCTCTGGCGGATCCAACGGTGTGGTGACGCCGGCGAAGAGTATGTGTGCGGACAATTTCTTCAGAGGGTACCTAAATTTCCCGAACTACATGGCGAATACGCAGTCGTTTAAGGCGAAATTGAGGTCCCACAGCGCTCCGAAACAGAGGCCGGAGCCGGGAACGAAGAAGAGGCTTTCGCTGAACGAATTGATGGAATCTCGGAGCAGCCTCAGCGGCGTTCGGATGCAGAGGTCGTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTGGACAGGCCCTCAGAATGCCAATTGCAGAGAAGATTATGA 1284 54.36 MGRASRWLKNLFGIKKEKAPTRENSVAGVRKEKNPTSNFAGNSELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFVGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRNRRLVNDEIINNRPEFRARKSTERFDDTKSEHTASVHSRRLSATLDTAFTALEESPKIVEMDTGRPKSWSRRTNTSASELGDDPFHQALSSPLPCRTPSRLQIPDCRNFQDSDWGLAGDECRLISTAQSTPRFISSGGSNGVVTPAKSMCADNFFRGYLNFPNYMANTQSFKAKLRSHSAPKQRPEPGTKKRLSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSECQLQRRL 427
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5996478 5998319 + MC06g0728 Mch6g0862 690309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0862 427 PANTHER IQ-DOMAIN 5-RELATED 6 396 - -
Mch6g0862 427 MobiDBLite consensus disorder prediction 22 44 - -
Mch6g0862 427 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515(InterPro)
Mch6g0862 427 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515(InterPro)
Mch6g0862 427 ProSiteProfiles IQ motif profile. 145 172 - -
Mch6g0862 427 Pfam Protein of unknown function (DUF4005) 323 391 IPR025064 -
Mch6g0862 427 MobiDBLite consensus disorder prediction 245 270 - -
Mch6g0862 427 ProSiteProfiles IQ motif profile. 121 149 - -
Mch6g0862 427 MobiDBLite consensus disorder prediction 30 44 - -
Mch6g0862 427 Gene3D - 118 169 - -
Mch6g0862 427 SMART iq_5 120 142 IPR000048 GO:0005515(InterPro)
Mch6g0862 427 SMART iq_5 143 164 IPR000048 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0862 Mch-Chr6:5996478 Mch7g1041 Mch-Chr7:14536644 2.90E-24 dispersed
Mch3g0249 Mch-Chr3:3450578 Mch6g0862 Mch-Chr6:5996478 6.43E-13 transposed
Mch6g0862 Mch-Chr6:5996478 Mch8g1216 Mch-Chr8:8718339 5.25E-78 wgd
Mch6g0862 Mch-Chr6:5996478 Mch9g0298 Mch-Chr9:2216351 1.20E-108 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0862 - - - 0.0