Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0886 ATGATGCTCGGCGAACGCCACCGCCCTGCGGCGGTGGTCCACATAACTCCGTTGATGATACCGGAGGAACCTGCGAACGAGACGCGGTTTCCTTTCCCTCTGAGCGGAATCTCGGTGAGTCCCGATGGCAATGTCAATGGAGGCGGCGACTATTCTCCCTATTATCTGCAGGAAGCCCTAGCGGCGCTACAGCGTTATCTGCCGCCGGCGAACGAGTCGGAGATTGAATCCGATTCCGAGATGTTGGCTCGGGAATCGGATGTTCCGGTGGATGCTTACTCTTGCGATCATTTTCGTATATTCGAGTTCAAGGTGAGGAAGTGCACGCGTGGGAGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATAATTACTCTGGTACGGCGTGCCCTGACTTCAGAAAAGGAAGCTGTAAGAAGGGGGATTCGTGCGAGTTTGCGCATGGTGTGTTTGAGTGCTGGCTCCATCCTGCTCGTTATCGGACTCAGCCCTGTAAGGACGGGACCAACTGCAGAAGGAGGGTCTGTTTCTTCGCTCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCCGATTCGTATGATGAATCTCCTCTGCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTTTGTCTTCTCCGGTGTCTGTTTCACCATCGGCGACTCCAGTGGACTCGCCGCCGTTGTCGCCGATGACTAGGTCGCTCGGCCGCTCTCTTGGCTCGAGCAACATCAATGAAATGGTCGCATCGCTCCGGAACTTGCATCTGAGCAAGGTCAAGTCTCTGCCCTCCTCATGGAATGCCCAAGTTGGATCTCCCAGTTACCATTCTCGAATCCGACCCGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCGACTGGTCATGGAATTGGGCTTCTAGACTTCTTGGACCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTCGAATCAGGAAGGGAGCTTAGAGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACTTGGTTGATTCAAGTCCTTCAGTCTGCGCACCGGATGTTGAGTGGGTCTCAGAGCTCGTGAAGTGA 1158 54.92 MMLGERHRPAAVVHITPLMIPEEPANETRFPFPLSGISVSPDGNVNGGGDYSPYYLQEALAALQRYLPPANESEIESDSEMLARESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYNYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDESPLRQSLDGSCAKSLPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSNINEMVASLRNLHLSKVKSLPSSWNAQVGSPSYHSRIRPGFCSLPTTPTRAPTGHGIGLLDFLDHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSPSVCAPDVEWVSELVK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6190545 6193060 - MC06g0747 Mch6g0886 690333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0886 385 PANTHER UNKEMPT FAMILY MEMBER 49 385 IPR045234 -
Mch6g0886 385 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 162 IPR000571 GO:0046872(InterPro)
Mch6g0886 385 MobiDBLite consensus disorder prediction 238 258 - -
Mch6g0886 385 Gene3D - 132 208 - -
Mch6g0886 385 SMART c3hfinal6 172 195 IPR000571 GO:0046872(InterPro)
Mch6g0886 385 SMART c3hfinal6 137 163 IPR000571 GO:0046872(InterPro)
Mch6g0886 385 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872(InterPro)
Mch6g0886 385 SUPERFAMILY CCCH zinc finger 136 166 IPR036855 GO:0046872(InterPro)
Mch6g0886 385 MobiDBLite consensus disorder prediction 200 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0886 Mch-Chr6:6190545 Mch8g0594 Mch-Chr8:4229834 9.81E-77 dispersed
Mch10g0293 Mch-Chr10:1925443 Mch6g0886 Mch-Chr6:6190545 1.10E-53 transposed
Mch4g0140 Mch-Chr4:937309 Mch6g0886 Mch-Chr6:6190545 1.63E-69 transposed
Mch8g3199 Mch-Chr8:34150729 Mch6g0886 Mch-Chr6:6190545 1.55E-151 transposed
Mch11g0396 Mch-Chr11:2510719 Mch6g0886 Mch-Chr6:6190545 2.85E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43553 PF00642 zf-CCCH 1.70E-06 CL0537 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0886 - - - 0.0