Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0941 ATGGAGAATCTTCAGGAGGTTGAAGAAGACGGGGAGGGACCCGCCGCCGTGGAGGATGAAGAAGTGGAAATCGGAATCGTGGGTTCCAGCTTGACTCTGGAGAAAGTCGCCGCGGCCAAACAGTACATCGAGAACCATTACAAGGCTCAAAAGAAGCACATTCAAGAGCGCAAGGAGAGGCGCTCTGTGCTAGAAAAGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTTTTGAAGGACTTGGAGCGCACGGAGACTCATTACATGAGGCTGAAAAGGCATAAAATTTGTGTTGAAGATTTCGACCTTTTGACAATAATCGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCACTATATATGCCATGAAGAAGCTGAGGAAATCAGAAATGCTCAGCAGAGGACAGGTCGAACATGTCCGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATACCGAATACTTGTATCTGATTATGGAGTATCTTCCTGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACAGAAACCGTGGCTAGATTTTACGTGGCCCAAAGTGTTCTGGCAATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAACCTGATAACCTTCTGCTGGACAAAAGGGGTCATATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTGTCTGCTATAAATGAAAATGAAGTCCTTGATGATGATAGCTTGCACGATACAGTCGACGTGGATGAGAGCTTCCCAGGTAAAAAAAGCGGGAGGCGCTGGAAGAGCCCTCTTGAACAACTTCAGCACTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTACATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTACATTGGAAAAATCACTTAAAATTCCCCGATGAGATAAGATTAACACCTGAAGCAAAAGATTTGATCAGTAGGCTGCTTTGTGATGCCGAGCATAGGCTCGGTACTGGAGGTGCAGACCAAATCAAGGCTCACCCTTGGTTCAAAGATACCGTCTGGGACAATCTCTATGAAATTGATGCAGCATTTAAGCCCGAGGTCAATGGGGAACTTGATACGCAAAATTTTATGCAATTTGATGAGGTTGATCCACCACCGACTAGAAGCGGATCTGGACCGATAAGGAAGATGATGTTGACTCCCAAGGATCTTAGTTTTGTTGGTTATACATACAAAAACTTTGAAGCTGTCAAAGGTTTACACCATTCATTTGATTTGAAGTCGAGCACCGGCCCGACACGGACTTCCTCTGTCGACTCTACTCAGAGTGACTCAGCATTGAACTACTCCACCACCTGCTCAACAGATGACAGGGAAGCAGCCATACTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1611 44.51 MENLQEVEEDGEGPAAVEDEEVEIGIVGSSLTLEKVAAAKQYIENHYKAQKKHIQERKERRSVLEKKLASSDVSEEEQINLLKDLERTETHYMRLKRHKICVEDFDLLTIIGRGAFGEVRLCREKKTGTIYAMKKLRKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDMMTLLIREETLTETVARFYVAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSAINENEVLDDDSLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLTPEAKDLISRLLCDAEHRLGTGGADQIKAHPWFKDTVWDNLYEIDAAFKPEVNGELDTQNFMQFDEVDPPPTRSGSGPIRKMMLTPKDLSFVGYTYKNFEAVKGLHHSFDLKSSTGPTRTSSVDSTQSDSALNYSTTCSTDDREAAILASSGDALSQ 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6647365 6655754 + MC06g0796 Mch6g0941 690388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0941 536 CDD MobB_NDR_LATS-like 39 100 - -
Mch6g0941 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 Gene3D Transferase(Phosphotransferase) domain 1 189 254 - -
Mch6g0941 536 Gene3D Transferase(Phosphotransferase) domain 1 311 430 - -
Mch6g0941 536 CDD STKc_NDR_like 103 476 - -
Mch6g0941 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 481 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Mch6g0941 536 FunFam Non-specific serine/threonine protein kinase 431 441 - -
Mch6g0941 536 FunFam Non-specific serine/threonine protein kinase 311 430 - -
Mch6g0941 536 FunFam Non-specific serine/threonine protein kinase 189 256 - -
Mch6g0941 536 FunFam Non-specific serine/threonine protein kinase 66 188 - -
Mch6g0941 536 Pfam Protein kinase domain 107 254 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 Pfam Protein kinase domain 305 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 SUPERFAMILY Protein kinase-like (PK-like) 87 464 IPR011009 -
Mch6g0941 536 MobiDBLite consensus disorder prediction 490 515 - -
Mch6g0941 536 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524(InterPro)
Mch6g0941 536 MobiDBLite consensus disorder prediction 489 515 - -
Mch6g0941 536 ProSiteProfiles Protein kinase domain profile. 105 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 Gene3D Phosphorylase Kinase; domain 1 103 188 - -
Mch6g0941 536 Gene3D Phosphorylase Kinase; domain 1 431 441 - -
Mch6g0941 536 SMART pkinase_C_6 413 477 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 SMART serkin_6 105 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 485 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0941 536 Pfam Protein kinase C terminal domain 431 475 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0191 Mch-Chr6:1276298 Mch6g0941 Mch-Chr6:6647365 1.03E-59 dispersed
Mch6g0941 Mch-Chr6:6647365 Mch7g0952 Mch-Chr7:13933984 3.35E-229 dispersed
Mch6g0941 Mch-Chr6:6647365 Mch6g0943 Mch-Chr6:6672508 9.15E-17 proximal
Mch9g0976 Mch-Chr9:8135716 Mch6g0941 Mch-Chr6:6647365 1.78E-223 transposed
Mch11g0433 Mch-Chr11:2716606 Mch6g0941 Mch-Chr6:6647365 2.67E-283 wgd
Mch6g0941 Mch-Chr6:6647365 Mch8g3227 Mch-Chr8:34329790 3.43E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77486 PF00069 Pkinase 1.10E-42 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0941 K08790 - csv:101208238 949.118