Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0943 ATGAGGAAGGGAGGCTTCAGCACCAACCTCAAGCTCAATCTCCCCCAGGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGTGGCACGTTTAGGGATGGTGATCTGCTTGTAAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAGGCACCACCTCCGATTAAGCCTACCGATGATCAGTTGAGTTTAGCAGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTAAAGGTAATTCAGATGAAAATTGAGGAATCTCACCGCAAGCAGATTGCTCAAGAACTGAAAATCAATCAATCGGCACAGTGTCCCTATATTGTTATCTGTTACCAATCTTTTTATGATAATGGGTCTATATATATCATCCTAGAGTACATGGATGGGGGATCTTTAGCAGATTTTCTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCTGCCATTTGTAAGCAGGTGCTCAAGGGGCTGTTGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCGTCTAACTTGTTAATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTCGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTCGGAGCAAGATATGACAACAAAAGCGACATTTGGTGCTTGGGGCTGATATTACTTGAGTGTGCAACCGGCAAATTCCCTTATTCTCCACCAGGGCAAGATGGAGGATGGGTTAACTTTTATGAGCTTATGGAAGCCATTGTCGAGGGTGAACCTCCGTCTGCTCCATCTGACCAATTTACTCCCAACTTCTGTGCGTTCATTTCTGCATGTGTGCAACAAGACCCAAAAGTTAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGCTATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTTTAA 1062 42.47 MRKGGFSTNLKLNLPQEDQSIAKFLTQSGTFRDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVICYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAAICKQVLKGLLYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGARYDNKSDIWCLGLILLECATGKFPYSPPGQDGGWVNFYELMEAIVEGEPPSAPSDQFTPNFCAFISACVQQDPKVRLSARELLEHPFIKMYEDTAIDLSSYFNDAGSPLATF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6672508 6677115 - MC06g0798 Mch6g0943 690390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0943 353 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 SUPERFAMILY Protein kinase-like (PK-like) 53 334 IPR011009 -
Mch6g0943 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 16 348 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch6g0943 353 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Mch6g0943 353 Gene3D Transferase(Phosphotransferase) domain 1 149 349 - -
Mch6g0943 353 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Mch6g0943 353 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
Mch6g0943 353 CDD PKc_MAPKK_plant_like 67 333 - -
Mch6g0943 353 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0943 K20603 - - csv:101204545 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0943 Mch-Chr6:6672508 Mch8g3227 Mch-Chr8:34329790 2.47E-183 dispersed
Mch6g0941 Mch-Chr6:6647365 Mch6g0943 Mch-Chr6:6672508 9.15E-17 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0943 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 69.6 3.6e-133 471.5
Mch8g3227 . 28 352 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.1e-125 445.7
Mch8g3186 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 6.2e-109 391.0
Mch6g0943 . 1 324 MAP Kinase Kinase Gene Family AT4G29810 69.5 1.2e-133 473.0
Mch8g3227 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 62.5 4.7e-117 417.9
Mch8g3186 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.1e-110 396.7
Mch8g1481 . 36 510 MAP Kinase Kinase Gene Family AT5G40440 79.3 9.7e-228 786.2
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 64.9 7.0e-127 450.7
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 65.1 3.0e-127 451.8
Mch3g1570 . 39 310 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-85 311.6
Mch8g3186 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 84.8 3.1e-172 601.3
Mch6g0943 . 10 350 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.9e-117 418.7
Mch8g3227 . 1 341 MAP Kinase Kinase Gene Family AT5G56580 56.9 6.4e-109 391.0
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 62.7 8.0e-108 387.1
Mch8g1018 . 73 339 MAP Kinase Kinase Gene Family AT1G18350 51.5 9.6e-77 283.9
Mch3g1570 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 52.6 4.2e-82 301.6
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 65.4 4.4e-114 407.9
Mch8g1018 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 52.1 7.4e-77 284.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77487 PF00069 Pkinase 1.50E-69 CL0016 Mch PK