Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0943 ATGAGGAAGGGAGGCTTCAGCACCAACCTCAAGCTCAATCTCCCCCAGGAAGACCAATCCATAGCCAAGTTCCTAACGCAGAGTGGCACGTTTAGGGATGGTGATCTGCTTGTAAACAGAGATGGGGTTCGGATTGTTTCTCAGAGCGAAGTTGAGGCACCACCTCCGATTAAGCCTACCGATGATCAGTTGAGTTTAGCAGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTAAAGGTAATTCAGATGAAAATTGAGGAATCTCACCGCAAGCAGATTGCTCAAGAACTGAAAATCAATCAATCGGCACAGTGTCCCTATATTGTTATCTGTTACCAATCTTTTTATGATAATGGGTCTATATATATCATCCTAGAGTACATGGATGGGGGATCTTTAGCAGATTTTCTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCTGCCATTTGTAAGCAGGTGCTCAAGGGGCTGTTGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCGTCTAACTTGTTAATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGAGAGGCTAATACTTTCGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTCGGAGCAAGATATGACAACAAAAGCGACATTTGGTGCTTGGGGCTGATATTACTTGAGTGTGCAACCGGCAAATTCCCTTATTCTCCACCAGGGCAAGATGGAGGATGGGTTAACTTTTATGAGCTTATGGAAGCCATTGTCGAGGGTGAACCTCCGTCTGCTCCATCTGACCAATTTACTCCCAACTTCTGTGCGTTCATTTCTGCATGTGTGCAACAAGACCCAAAAGTTAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACGGCTATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTTTAA 1062 42.47 MRKGGFSTNLKLNLPQEDQSIAKFLTQSGTFRDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVICYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAAICKQVLKGLLYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGARYDNKSDIWCLGLILLECATGKFPYSPPGQDGGWVNFYELMEAIVEGEPPSAPSDQFTPNFCAFISACVQQDPKVRLSARELLEHPFIKMYEDTAIDLSSYFNDAGSPLATF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6672508 6677115 - MC06g0798 Mch6g0943 690390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0943 353 Pfam Protein kinase domain 71 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 SUPERFAMILY Protein kinase-like (PK-like) 53 334 IPR011009 -
Mch6g0943 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0943 353 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 16 348 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch6g0943 353 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Mch6g0943 353 Gene3D Transferase(Phosphotransferase) domain 1 149 349 - -
Mch6g0943 353 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Mch6g0943 353 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
Mch6g0943 353 CDD PKc_MAPKK_plant_like 67 333 - -
Mch6g0943 353 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0943 Mch-Chr6:6672508 Mch8g3227 Mch-Chr8:34329790 2.47E-183 dispersed
Mch6g0941 Mch-Chr6:6647365 Mch6g0943 Mch-Chr6:6672508 9.15E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77487 PF00069 Pkinase 1.50E-69 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0943 K20603 - csv:101204545 668.692