Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0955 ATGGCGGATAAGGAAGGAACGGAACAGGTTGTTTTACGGATTTTGGACTCCGAAGGAGCGGTTGATGGAACTAAAGATCACACTAAACGCTCTGTTGCTTCCCATCCTGATTTTGAGCTTAAGGAAACTCGGAGTATTAGGTGCACAATACCGCAGTCTGGGGTTGGGAGCTCTCCTTCGCCGGAGATTGCCAGAATGAGTCCCCTTAAACCTCCAAAAATTCCAGTCGAATCGACAGTTCGGCGCCCATCATTTGCTCGTTCGTCATTTTCCAAGCCTAAATCAAGACTAGTAGAGCCGCCTTGTCCCGGTGGTGCAAATTTGGCAGAAGATAAGGCCCAAGCGAAATCAACATCTGGTTCACCGTACAATAACTCCCCTGCTAAGATTACCACCGCCACTAGTCCTCGAGATGCTTTGAAGTCGGCCCCGATAACTCCCAAGACTCCATTGATTGGATCTATTGGAAGTGAGGAGGAAGATGATGAAGAGGTTTACAAAACTGCAGAATTGAAGGTGAAAGAGAGATCAGGGAGAAAGTTGAAAATCACCATCTTGATCGAATGGGTTGCTTTTTTGTGCATAACAGGGTGTTTCATTGCTAGCTTAACGATACACAAGTTGCAGACTACAGAGATCTGGGGATTGGGACTGTGGCAATGGTGTGTGCTGGTATTAGTAATTTTCTGTGGTCGTTTATTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTCAGAAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAATTTTTATTTGGTTGGCCTTGGTTCTTCTGGCATGGGGTCTATTATTTGATCATAGCAGAAAGAGATCTAAGAAAGCCAATGATATTCTGAATTATGTTACACGAGCTCTTGCTGCATCTCTTGCTGGAGCAGGCTTGTGGCTGCTGAAAACTCTGTTGGTGAAGATACTAGCCGCTTCTTTTCAATGCACTCGGTTCTTCGATCGGATTCAAGAATCGATCTTCCATCAGTATATCCTGCGCACTCTATCAGGACCCCCACTGATAGAGATGGCAGAGAGGGTTGGGAGAACAGCAAGCACAGGGCAATTGAGTTTCAGGCATTTGAAGAAACAAAGCGATGGTGGGAACGAAGGGAAGGAAGAGGTGATCGATGTTGATAAGCTCAAAAAGATGAAACAAGAGAAAATCTCTGCTTGGACCATGAGAGGGCTGATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAATGAGGAAGAGAGTGAGCAAAAAGATAAGGAGATCAACAGTGAATGGGAGGCAAGGGCTGCAGCTTACCAAATTTTCAGGAATGTGGCGAAACCCGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAGGAGGAGGTTGAGAATGTGCTCCCGTTGTTTGAAGGAGCAGTCGAGACCGGAAAAATCAAGCGAAAAACGCTGAAGAATTGGCTGGTGAACGTTTATGTCGAACGCAAGTCGCTCGCCCACTCGTTGAATGACACCAAGACTGCAATAGAGGAGCTAAACAAGCTTGCTTCAGCAGTTGTTCTGATAGTGATTATCATTGTATGGCTGCTTCTGATGGGTCTCTTGACAACGCAAATACTTGTCTTCATTTCATCTCAGCTTCTGCTGGTGGTTTTCATGTTTGGTAACACTGCCAGAACTGTGTTTGAAGCCATCATATTCGTATTTGTGATGCATCCATTCGACGTGGGGGATCGTTGTGTTGTAGATGGTGTACAGATGGTTGTGGAAGAGATGAACATTTTGACCACAATTTTCTTGAGATTTGACAATGAGAAGATCTTCTATCCAAATTCAGTTCTCGCCACCAAACCCATCAGCAACTTCTACAGAAGCCCCGAAATGAGCGATTCGATCGAATTCTCTGTCGACTTTTCCACATCAATTGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAATCATACCTGGAAAGCAAACCGCAGTTCTGGCGGCCGGGCCACAGCGTCGTCGTCAAGGAGATCGAGAACGTTAACAAGATGAAGATGGGTCTATACGTGAATCACACCATAAACTTTCAGAACTACGGCGACAAGAGCAGTCGGAGATCGGATCTAGTGTTGGAGCTGAAGAAAATTTTGGAAGAACTGGGCATCAAGTACCATCTCCTACCTCAAGAAGTGTATCTCAACTCTGTGGGTTCAGCAGCTCCTATGGTGCCCCCATCGCCGAGATGA 2295 44.66 MADKEGTEQVVLRILDSEGAVDGTKDHTKRSVASHPDFELKETRSIRCTIPQSGVGSSPSPEIARMSPLKPPKIPVESTVRRPSFARSSFSKPKSRLVEPPCPGGANLAEDKAQAKSTSGSPYNNSPAKITTATSPRDALKSAPITPKTPLIGSIGSEEEDDEEVYKTAELKVKERSGRKLKITILIEWVAFLCITGCFIASLTIHKLQTTEIWGLGLWQWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLRRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDHSRKRSKKANDILNYVTRALAASLAGAGLWLLKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLIEMAERVGRTASTGQLSFRHLKKQSDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFNEEESEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEVENVLPLFEGAVETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLASAVVLIVIIIVWLLLMGLLTTQILVFISSQLLLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRFDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARIKSYLESKPQFWRPGHSVVVKEIENVNKMKMGLYVNHTINFQNYGDKSSRRSDLVLELKKILEELGIKYHLLPQEVYLNSVGSAAPMVPPSPR 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6757565 6761295 + MC06g0810 Mch6g0955 690402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0955 764 Pfam Mechanosensitive ion channel, beta-domain 586 642 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g0955 764 FunFam Predicted mechanosensitive ion channel 593 642 - -
Mch6g0955 764 SUPERFAMILY Sm-like ribonucleoproteins 583 642 IPR010920 -
Mch6g0955 764 MobiDBLite consensus disorder prediction 44 157 - -
Mch6g0955 764 MobiDBLite consensus disorder prediction 112 139 - -
Mch6g0955 764 PIRSF Memb_At2g17000 16 763 IPR016688 -
Mch6g0955 764 Gene3D - 593 642 IPR023408 -
Mch6g0955 764 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 68 752 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Mch6g0955 764 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0398 Mch-Chr2:2916034 Mch6g0955 Mch-Chr6:6757565 1.36E-159 dispersed
Mch4g0458 Mch-Chr4:2930402 Mch6g0955 Mch-Chr6:6757565 1.65E-157 dispersed
Mch7g0818 Mch-Chr7:12790702 Mch6g0955 Mch-Chr6:6757565 2.79E-203 transposed
Mch11g0446 Mch-Chr11:2792771 Mch6g0955 Mch-Chr6:6757565 2.53E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0955 K22048 - csv:101209209 1210.28