Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0964 ATGAGCGCCAGAAGTATGTTTCCCTTCACCTCAGCCCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATCCCTATACCTCCTGATCTCCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTTCTTTCACTTCTAAGCTCTTCCCCCACCACCCTCAGCATGTTGGATGGAACTATTTACAGATGAGTTTGGGGAGGAAAATAGACCCGGAACCAGGCAGGTGCAGGAGAACTGATGGGAAGAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAATGACATAAACCATCTCTCAAATCCAGCATTTTCTTCCCTAACCAACAACTCATCCATGCTCTCCTATAGGCCCTTCCCCGCTCATCAAATATCTTTAACTCCTAATGGAAATGCCATATCAACCCAAGACACTAGTACCCTCCTGCTTCTGGAGTCTGGTTCTTACTCGGATAGAAACCCAGATTACAGAAGAAGTAGGTACACTTATGGGCTAAAAGAGGATGTAGATGAGCATGTTTTCTTCTCACAAGAGCCTTCTGAAACTACTTCGAGAACTGATTTCTCTGCTTCATCCATGGCTGATTCTCTGCAACTTACACCACTATCAATGAGTTGTTCTTCTCTATACCCAAAACAGAACAACTGCTCCTCTTTGCAGAATGATCAGTCTTGCTATCAGATTCATGAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGACGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTCGATGATAAAACGTCAAATAATGGCTCAGTTTCCACCACTCGGCTCTCAATTTCTATTCCCACCGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCATAA 1002 43.51 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSSFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINHLSNPAFSSLTNNSSMLSYRPFPAHQISLTPNGNAISTQDTSTLLLLESGSYSDRNPDYRRSRYTYGLKEDVDEHVFFSQEPSETTSRTDFSASSMADSLQLTPLSMSCSSLYPKQNNCSSLQNDQSCYQIHESLTDPLKQQKRDESQKTVHRFFDEWPPKERGSWLDFDDKTSNNGSVSTTRLSISIPTASNDFPIFRSKNP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6816675 6818780 - MC06g0817 Mch6g0964 690411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0964 333 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch6g0964 333 Pfam WRC 77 118 IPR014977 -
Mch6g0964 333 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch6g0964 333 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Mch6g0964 333 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch6g0964 333 PANTHER GROWTH-REGULATING FACTOR 5 2 320 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0964 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1313 Mch-Chr1:15199387 Mch6g0964 Mch-Chr6:6816675 3.10E-35 dispersed
Mch5g1644 Mch-Chr5:17271562 Mch6g0964 Mch-Chr6:6816675 1.91E-34 dispersed
Mch6g0964 Mch-Chr6:6816675 Mch8g0608 Mch-Chr8:4368941 1.91E-34 dispersed
Mch2g1238 Mch-Chr2:8580777 Mch6g0964 Mch-Chr6:6816675 9.00E-55 transposed
Mch8g1029 Mch-Chr8:7258219 Mch6g0964 Mch-Chr6:6816675 7.15E-57 transposed
Mch6g0964 Mch-Chr6:6816675 Mch8g3244 Mch-Chr8:34427956 6.07E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0964 . 8 110 GRF Transcription Factor Family AT3G13960 73.8 1.5e-42 170.6
Mch8g3244 . 2 111 GRF Transcription Factor Family AT3G13960 70.3 7.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43560 PF08879 WRC 1.10E-20 No_clan Mch TF