Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0964 ATGAGCGCCAGAAGTATGTTTCCCTTCACCTCAGCCCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATCCCTATACCTCCTGATCTCCTCTTCAGTATTAAAAGAAGTACCTTGGACTCTTCTTTCACTTCTAAGCTCTTCCCCCACCACCCTCAGCATGTTGGATGGAACTATTTACAGATGAGTTTGGGGAGGAAAATAGACCCGGAACCAGGCAGGTGCAGGAGAACTGATGGGAAGAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAATGACATAAACCATCTCTCAAATCCAGCATTTTCTTCCCTAACCAACAACTCATCCATGCTCTCCTATAGGCCCTTCCCCGCTCATCAAATATCTTTAACTCCTAATGGAAATGCCATATCAACCCAAGACACTAGTACCCTCCTGCTTCTGGAGTCTGGTTCTTACTCGGATAGAAACCCAGATTACAGAAGAAGTAGGTACACTTATGGGCTAAAAGAGGATGTAGATGAGCATGTTTTCTTCTCACAAGAGCCTTCTGAAACTACTTCGAGAACTGATTTCTCTGCTTCATCCATGGCTGATTCTCTGCAACTTACACCACTATCAATGAGTTGTTCTTCTCTATACCCAAAACAGAACAACTGCTCCTCTTTGCAGAATGATCAGTCTTGCTATCAGATTCATGAGAGCCTCACAGACCCTTTGAAGCAACAAAAGAGAGACGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGATTTCGATGATAAAACGTCAAATAATGGCTCAGTTTCCACCACTCGGCTCTCAATTTCTATTCCCACCGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCATAA 1002 43.51 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSIKRSTLDSSFTSKLFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINHLSNPAFSSLTNNSSMLSYRPFPAHQISLTPNGNAISTQDTSTLLLLESGSYSDRNPDYRRSRYTYGLKEDVDEHVFFSQEPSETTSRTDFSASSMADSLQLTPLSMSCSSLYPKQNNCSSLQNDQSCYQIHESLTDPLKQQKRDESQKTVHRFFDEWPPKERGSWLDFDDKTSNNGSVSTTRLSISIPTASNDFPIFRSKNP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6816675 6818780 - MC06g0817 Mch6g0964 690411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0964 333 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch6g0964 333 Pfam WRC 77 118 IPR014977 -
Mch6g0964 333 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch6g0964 333 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Mch6g0964 333 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch6g0964 333 PANTHER GROWTH-REGULATING FACTOR 5 2 320 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1313 Mch-Chr1:15199387 Mch6g0964 Mch-Chr6:6816675 3.10E-35 dispersed
Mch5g1644 Mch-Chr5:17271562 Mch6g0964 Mch-Chr6:6816675 1.91E-34 dispersed
Mch6g0964 Mch-Chr6:6816675 Mch8g0608 Mch-Chr8:4368941 1.91E-34 dispersed
Mch2g1238 Mch-Chr2:8580777 Mch6g0964 Mch-Chr6:6816675 9.00E-55 transposed
Mch8g1029 Mch-Chr8:7258219 Mch6g0964 Mch-Chr6:6816675 7.15E-57 transposed
Mch6g0964 Mch-Chr6:6816675 Mch8g3244 Mch-Chr8:34427956 6.07E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43560 PF08879 WRC 1.10E-20 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0964 - - - 0.0