Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0978 ATGACGATGAAGAAGAAGGTGTCGTGGAGGTCGTTTCTGCCGCCGATCTGCGGCGGCGAGATGCCGGCGAAGGCGACAAAGAAGGTGGCGGCGAAGCAGAATTCTTTCAAGAGAATTTCGCAGGTGGATTTGAGCAATCCAGGGTCGGTTCTGTCGGAGGACCTGTCCATATCCCTCGCCGGCTCCAACATTCATATGTTCACTTTGGGAGAGATTAAGGTTATGACACAGAGCTTCTCCACCGGAAGTTTCATCGGAGAAGGCGGCTTCGGCCCCGTCTACAAAGGATTCATCGACGACAAGCTCCGCCCCGGCCTCAAGGCTCAGCCCGTCGCCGTCAAGCTCCTCGACTTGGACGGCTCCCAAGGCCACCGCGAGTGGCTGACGGAGGTGATTTTTTTGGGACAATTACGGCATCCCCATCTGGTGAAATTGATTGGATATTGCTGTGAAGATGAACACAGGGTGTTGGTTTATGAGTACATGCCAAGAGGGAGCTTGGAAAACCAACTCTTCAGAAGATATTCAGTGTCTCTACCATGGTCAACAAGAATGAAAATTGCTCTAGGAGCAGCCAAGGGACTGGCTTTCCTTCACGAAGCAGATAAACCAGTAATTTACAGAGATTTCAAAGCTTCAAATATCTTATTGGACTCGGATTATAATGCGAAGCTGTCGGATTTCGGGCTGGCGAAAGACGGGCCCGATGGAGACGATACCCATGTCTCCACGAGAGTCATGGGAACCGAAGGCTACGCCGCCCCAGAATATGTTATGACTGGTCACTTGACGGCAATGAGCGACGTGTATAGCTTTGGAGTGGTTCTACTGGAGCTGCTGACCGGACGGCGGTCGTTGGAGAAGGGGCGGCCGCACCGGGAACAGAATTTGGTGGAGTGGGCGCGGCCGATGCTCAACGACAATCGGAAGCTTTGCCGGATAATGGACACGAGGCTCGAGGGGCAGTACTCGGAGATCGGAGCCAGAAAGGCGGCGGCATTGGCTTACCAATGCCTCAGCCACCGCCCCAAGCAGCGGCCGCCGATGAGCGAAGTGGTCAAAACTCTGGAGCCACTCAAGGACTACCAAGACATGCCGATCGGAACCTTCGTGTTCGCCGTGCCGTCGTCGGAGACACCCCCGGCGAACGGCGGAGGACACCACCATCAGAGACAGAATCAACCCCGACACCCGAGATCGCCGAATTCATTGACGGAAAATGCCCCCCGGAGCGGCCACCGGAGAGGAGGCGGCGGCCGGACACCGTAG 1269 55.71 MTMKKKVSWRSFLPPICGGEMPAKATKKVAAKQNSFKRISQVDLSNPGSVLSEDLSISLAGSNIHMFTLGEIKVMTQSFSTGSFIGEGGFGPVYKGFIDDKLRPGLKAQPVAVKLLDLDGSQGHREWLTEVIFLGQLRHPHLVKLIGYCCEDEHRVLVYEYMPRGSLENQLFRRYSVSLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPDGDDTHVSTRVMGTEGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSLEKGRPHREQNLVEWARPMLNDNRKLCRIMDTRLEGQYSEIGARKAAALAYQCLSHRPKQRPPMSEVVKTLEPLKDYQDMPIGTFVFAVPSSETPPANGGGHHHQRQNQPRHPRSPNSLTENAPRSGHRRGGGGRTP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6907427 6909809 + MC06g0829 Mch6g0978 690425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0978 422 CDD STKc_IRAK 85 359 - -
Mch6g0978 422 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
Mch6g0978 422 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0978 422 FunFam Serine/threonine-protein kinase BIK1 47 161 - -
Mch6g0978 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0978 422 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Mch6g0978 422 PANTHER OS01G0588500 PROTEIN-RELATED 55 360 IPR050823 -
Mch6g0978 422 MobiDBLite consensus disorder prediction 373 422 - -
Mch6g0978 422 SUPERFAMILY Protein kinase-like (PK-like) 57 357 IPR011009 -
Mch6g0978 422 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0978 422 FunFam Probable serine/threonine-protein kinase PBL8 162 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0978 Mch-Chr6:6907427 Mch8g3060 Mch-Chr8:33084525 5.02E-126 dispersed
Mch10g0925 Mch-Chr10:6545466 Mch6g0978 Mch-Chr6:6907427 6.10E-150 transposed
Mch5g2025 Mch-Chr5:19833341 Mch6g0978 Mch-Chr6:6907427 2.37E-154 transposed
Mch6g1020 Mch-Chr6:7231172 Mch6g0978 Mch-Chr6:6907427 5.41E-141 transposed
Mch8g2586 Mch-Chr8:29005514 Mch6g0978 Mch-Chr6:6907427 9.27E-139 transposed
Mch9g2379 Mch-Chr9:23655443 Mch6g0978 Mch-Chr6:6907427 7.85E-29 transposed
Mch11g0459 Mch-Chr11:2900962 Mch6g0978 Mch-Chr6:6907427 2.02E-154 wgd
Mch6g0978 Mch-Chr6:6907427 Mch8g3249 Mch-Chr8:34453422 7.51E-180 wgd
Mch6g0978 Mch-Chr6:6907427 Mch9g0216 Mch-Chr9:1630856 5.15E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77488 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0978 - - - 0.0