Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1002 ATGTATCGGCCGGCCGTTGCTTCATCTTCTCCGGTGGCGGTGGCGATCGCGTTGGCGGTAATCCAACTGATCATAATACTTCCGGCCGCCGTCGTAGCTCGCACGAAACCGATTCCGGCCGAGCCATCAAAACTCGACGAATGGATCGAGAACAACATGAAAGAATATCACGAACGTAAGGCGAACGACACCGGAGTCAAAGCCCTAGACAAGCGGCTCGCCATGGCGGAGGACGCCGTTCGGCTTATCACGGTACGACCGGACGGCCGCGGAAATTTCACCACCATCACCGCCGCGATCGAGAGCATTCCGGCGGGAAACACGGCTCGAGTCATAGTGTGGATCGCCGGCGGAATTTACCGCGAGAAGATCACGATCGACGCGTCGAAGCCGTTCGTTACGCTGTACGGACAGAACGGGAAAATGCCGGTGATAACGTTCGACGGCACGGCGTCGGAATTTGGAACCGTGCAGAGCGCGACGGTGGCGGTGGAATCGGATTACTTCGTCGCCGTTAACATTGCGTTTGTGAATTCAGCTGCAATGCCTGACGTAAGAGTGTCGGGAGGACAGGCAGTGGCAATGAGGATATCTGGGGACAAGGCAGCATTCCACCACTGCCATTTCATAGGATTTCAGGACACATTATGCGACGACAGAGGCAGACATTTCTTCAAGGATTGTTACATCGAAGGCACTGTTGACTTCATCTTCGGCAATGGCAAATCCCTCTACTTGAAAACTAGAATAAACTCAGTGGCGGAAGGGATGGGAGTGATCACAGCTCAAGCGAGGGAAGATGCAACAGACGACAGCGGATTCACATTTGTATATTGCAACATCACAGGAACTGGAAACACGTATCTAGGAAGAGCATGGAAGGAGAGAACTCGTGTGGTTTTTGCCTACACATACATGGGAAATCTCATTAACACCGAAGGATGGTCCGACAAAATGCACCACGGAGAGCCTAGAAAGAGTATGTACTATGGAGAGTACAAATGCATGGGGCCCGGGGCGACCCCAGCGGGACGAGTGAAGTATGCGAGAATACTCTCCGACGAAGAAGCGAGGGCATTTTTGAGTATGACTTATATTCATGGAAACAAATGGCTTCTCCCACCCCCACTTCTTTCTTTTTCCCGTTCTCATCCCAATACCTTCCATTGA 1170 52.22 MYRPAVASSSPVAVAIALAVIQLIIILPAAVVARTKPIPAEPSKLDEWIENNMKEYHERKANDTGVKALDKRLAMAEDAVRLITVRPDGRGNFTTITAAIESIPAGNTARVIVWIAGGIYREKITIDASKPFVTLYGQNGKMPVITFDGTASEFGTVQSATVAVESDYFVAVNIAFVNSAAMPDVRVSGGQAVAMRISGDKAAFHHCHFIGFQDTLCDDRGRHFFKDCYIEGTVDFIFGNGKSLYLKTRINSVAEGMGVITAQAREDATDDSGFTFVYCNITGTGNTYLGRAWKERTRVVFAYTYMGNLINTEGWSDKMHHGEPRKSMYYGEYKCMGPGATPAGRVKYARILSDEEARAFLSMTYIHGNKWLLPPPLLSFSRSHPNTFH 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7068394 7071241 + MC06g0852 Mch6g1002 690449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1002 389 Pfam Pectinesterase 83 369 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g1002 389 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Mch6g1002 389 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 43 372 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Mch6g1002 389 SUPERFAMILY Pectin lyase-like 82 373 IPR011050 -
Mch6g1002 389 Gene3D - 78 375 IPR012334 -
Mch6g1002 389 FunFam Pectinesterase 78 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0201 Mch-Chr2:1526702 Mch6g1002 Mch-Chr6:7068394 4.85E-130 dispersed
Mch2g0202 Mch-Chr2:1530949 Mch6g1002 Mch-Chr6:7068394 1.28E-135 dispersed
Mch6g1002 Mch-Chr6:7068394 Mch9g0630 Mch-Chr9:4728807 1.37E-89 dispersed
Mch6g1002 Mch-Chr6:7068394 Mch2g1109 Mch-Chr2:7523865 1.26E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1002 K01051 - csv:101214012 627.476