Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1072 ATGATGATGTTCAATGAGATGGGATTTTGTGACGATATGGATTTCCTTTGCGCTCCAATTGTGGAAGGAGATGCCATAGCTCCACCAACCGATCCCGATGCTGCGATGGAAGACGATTATTCTGATGAAGAGATCGATGCCGATGAACTCGAGAGGAGGATGTGGAGGTACAAGATGCGTCTCAAACGCCTCAAAGAGCAGAGCAAGGGTAAGGAAGGGATCGATATCGCGAAGCAACGACAGTCTCAAGAACAGGCCAGGAGGAAGAAGATGTCAAGAGCACAGGACGGAATCTTGAAGTACATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCAGTAACCGGAGCATCGGATAATCTTCGAGAATGGTGGAAGGACAAGGTCAGATTCGATCGAAATGGACCAGCTGCCATAGCCAAGTACCAAGCGGACAACGCAATTCCAGGAAGAAACGACGGTTGTAATTCGATCGGTCCAACCCCTCACACCTTGCAGGAACTTCAGGACACCACGCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGGTTTCCATTGGAGAAAGGCGTTCCTCCGCCGTGGTGGCCTACCGGAGTTGAGGAATGGTGGCCTCAGCTTGGCTTGCCGAAGGAGCAAGGTCCTCCACCTTACAAGAAGCCTCATGACCTGAAGAAGGCGTGGAAAGTCGGCGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTGAGGCAGTCGAAGTGTCTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACTTGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTAGGGAGCTTTATCCCGACTCTTGCCCGCCTTTGTCGTCCGGTGGGGGAAGTGGATCGATGGTCATTAACGACTGCAGCGAGTACGACGTAGACGGTGCTGAAGAGGAACCGAACTTTGATGTTCAAGATCGTAAACCCGATAACATCAGCTCATTCAACTTGGGAATGGAGAGGATGAGAGACCGGGTGCAGATTCGACAACCACCTTATCCAATCAAAGGGGAGGCTCCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGCGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACCGGAATTCCCGAGACAATCATCAGTTGACCTGCCCATATAGAACTTCTTCAGAGTTCAGTGGTTCAAACTTTCATGTCAATGAAGTAAAACCAGTTATCTTCCCTCAATCGTTCGCCCCGCCCAAGCCAGCTCCAGCTCCGGTCAGCTCAGTTCCATCTTCCTTCGACTTGTCCAGCTTAGGAGTTCCAGAAGATGGGCAAAAGCTGATCAGTGAGCTCATGTCGATCTACGACACCAACGTGCAGGGCAACAAGAACAACGTAAACACCGTTAACGCTGCCATCGCAGAGAATCAAAACCTTCCTCAGTTGAAGATCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTATAATGATGGAAGGAAACTTCTTCGAAGGATCAAACGTTTCGAGCAGCCATCCGATGTTCCCAAGAGACGAAGGCCAATTTGACCGGTTCAAGCCAATGAATACGCCTTTCGAAAACAACCACCACCAGCACAACCACAACCACAACAACAACAACAACTTCCACTTGATGTTCGGCTCTCCATTCGATTTATCAACCTTTGACTACAAAGAAGAAGTGCCTGGCGCAGCAGCCATCGATACACTATCGAAACAGCAGGACATTCCGTTATGGTATCAGTAA 1887 48.65 MMMFNEMGFCDDMDFLCAPIVEGDAIAPPTDPDAAMEDDYSDEEIDADELERRMWRYKMRLKRLKEQSKGKEGIDIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKEQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPDSCPPLSSGGGSGSMVINDCSEYDVDGAEEEPNFDVQDRKPDNISSFNLGMERMRDRVQIRQPPYPIKGEAPTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRNSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPAPVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNVQGNKNNVNTVNAAIAENQNLPQLKIQPQQDEYFRNQGIMMEGNFFEGSNVSSSHPMFPRDEGQFDRFKPMNTPFENNHHQHNHNHNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYQ 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7712561 7716153 - MC06g0916 Mch6g1072 690519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1072 628 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 611 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Mch6g1072 628 Gene3D - 172 305 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch6g1072 628 SUPERFAMILY DNA-binding domain of EIN3-like 174 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch6g1072 628 Gene3D - 80 157 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch6g1072 628 Coils Coil 33 67 - -
Mch6g1072 628 Pfam Ethylene insensitive 3, DNA-binding domain 48 295 IPR047091 GO:0003700(InterPro)
Mch6g1072 628 FunFam Ethylene insensitive 3-like 1 168 305 - -
Mch6g1072 628 FunFam Ethylene insensitive 3-like 1 80 158 - -
Mch6g1072 628 MobiDBLite consensus disorder prediction 69 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1072 K14514 - - csv:101206055 1129.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0690 Mch-Chr10:4728690 Mch6g1072 Mch-Chr6:7712561 3.74E-101 dispersed
Mch4g1944 Mch-Chr4:21943136 Mch6g1072 Mch-Chr6:7712561 1.32E-248 dispersed
Mch6g1072 Mch-Chr6:7712561 Mch6g1127 Mch-Chr6:8455604 3.29E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1072 . 1 627 EIL Transcription Factor Family AT2G27050 58.1 1.1e-190 663.3
Mch4g1944 . 1 505 EIL Transcription Factor Family AT2G27050 62.6 2.8e-170 595.5
Mch6g1072 . 33 333 EIL Transcription Factor Family AT1G73730 63.1 7.9e-106 381.3
Mch4g1944 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.2e-103 373.2
Mch10g0690 . 24 271 EIL Transcription Factor Family AT1G73730 54.5 2.5e-75 280.0
Mch6g1072 . 2 627 EIL Transcription Factor Family AT3G20770 62.6 3.8e-213 738.0
Mch4g1944 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 1.3e-173 606.7
Mch10g0690 . 24 364 EIL Transcription Factor Family AT5G10120 55.7 2.7e-102 369.4
Mch4g1944 . 32 300 EIL Transcription Factor Family AT5G10120 58.1 3.8e-85 312.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43567 PF04873 EIN3 9.60E-130 No_clan Mch TF