Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1072 ATGATGATGTTCAATGAGATGGGATTTTGTGACGATATGGATTTCCTTTGCGCTCCAATTGTGGAAGGAGATGCCATAGCTCCACCAACCGATCCCGATGCTGCGATGGAAGACGATTATTCTGATGAAGAGATCGATGCCGATGAACTCGAGAGGAGGATGTGGAGGTACAAGATGCGTCTCAAACGCCTCAAAGAGCAGAGCAAGGGTAAGGAAGGGATCGATATCGCGAAGCAACGACAGTCTCAAGAACAGGCCAGGAGGAAGAAGATGTCAAGAGCACAGGACGGAATCTTGAAGTACATGTTGAAGATGATGGAAGTTTGTAAAGCTCAAGGCTTTGTATATGGAATAATTCCAGAGAAGGGAAAACCAGTAACCGGAGCATCGGATAATCTTCGAGAATGGTGGAAGGACAAGGTCAGATTCGATCGAAATGGACCAGCTGCCATAGCCAAGTACCAAGCGGACAACGCAATTCCAGGAAGAAACGACGGTTGTAATTCGATCGGTCCAACCCCTCACACCTTGCAGGAACTTCAGGACACCACGCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGGTTTCCATTGGAGAAAGGCGTTCCTCCGCCGTGGTGGCCTACCGGAGTTGAGGAATGGTGGCCTCAGCTTGGCTTGCCGAAGGAGCAAGGTCCTCCACCTTACAAGAAGCCTCATGACCTGAAGAAGGCGTGGAAAGTCGGCGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTGAGGCAGTCGAAGTGTCTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACTTGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTAGGGAGCTTTATCCCGACTCTTGCCCGCCTTTGTCGTCCGGTGGGGGAAGTGGATCGATGGTCATTAACGACTGCAGCGAGTACGACGTAGACGGTGCTGAAGAGGAACCGAACTTTGATGTTCAAGATCGTAAACCCGATAACATCAGCTCATTCAACTTGGGAATGGAGAGGATGAGAGACCGGGTGCAGATTCGACAACCACCTTATCCAATCAAAGGGGAGGCTCCCACAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGCGAGTTCCTCCAGTGTCCTTATAGCGAACTCCGTCTCGGGTTTAATGACCGGAATTCCCGAGACAATCATCAGTTGACCTGCCCATATAGAACTTCTTCAGAGTTCAGTGGTTCAAACTTTCATGTCAATGAAGTAAAACCAGTTATCTTCCCTCAATCGTTCGCCCCGCCCAAGCCAGCTCCAGCTCCGGTCAGCTCAGTTCCATCTTCCTTCGACTTGTCCAGCTTAGGAGTTCCAGAAGATGGGCAAAAGCTGATCAGTGAGCTCATGTCGATCTACGACACCAACGTGCAGGGCAACAAGAACAACGTAAACACCGTTAACGCTGCCATCGCAGAGAATCAAAACCTTCCTCAGTTGAAGATCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTATAATGATGGAAGGAAACTTCTTCGAAGGATCAAACGTTTCGAGCAGCCATCCGATGTTCCCAAGAGACGAAGGCCAATTTGACCGGTTCAAGCCAATGAATACGCCTTTCGAAAACAACCACCACCAGCACAACCACAACCACAACAACAACAACAACTTCCACTTGATGTTCGGCTCTCCATTCGATTTATCAACCTTTGACTACAAAGAAGAAGTGCCTGGCGCAGCAGCCATCGATACACTATCGAAACAGCAGGACATTCCGTTATGGTATCAGTAA 1887 48.65 MMMFNEMGFCDDMDFLCAPIVEGDAIAPPTDPDAAMEDDYSDEEIDADELERRMWRYKMRLKRLKEQSKGKEGIDIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKEQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPDSCPPLSSGGGSGSMVINDCSEYDVDGAEEEPNFDVQDRKPDNISSFNLGMERMRDRVQIRQPPYPIKGEAPTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRNSRDNHQLTCPYRTSSEFSGSNFHVNEVKPVIFPQSFAPPKPAPAPVSSVPSSFDLSSLGVPEDGQKLISELMSIYDTNVQGNKNNVNTVNAAIAENQNLPQLKIQPQQDEYFRNQGIMMEGNFFEGSNVSSSHPMFPRDEGQFDRFKPMNTPFENNHHQHNHNHNNNNNFHLMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYQ 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7712561 7716153 - MC06g0916 Mch6g1072 690519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1072 628 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 611 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Mch6g1072 628 Gene3D - 172 305 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch6g1072 628 SUPERFAMILY DNA-binding domain of EIN3-like 174 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch6g1072 628 Gene3D - 80 157 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch6g1072 628 Coils Coil 33 67 - -
Mch6g1072 628 Pfam Ethylene insensitive 3, DNA-binding domain 48 295 IPR047091 GO:0003700(InterPro)
Mch6g1072 628 FunFam Ethylene insensitive 3-like 1 168 305 - -
Mch6g1072 628 FunFam Ethylene insensitive 3-like 1 80 158 - -
Mch6g1072 628 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0690 Mch-Chr10:4728690 Mch6g1072 Mch-Chr6:7712561 3.74E-101 dispersed
Mch4g1944 Mch-Chr4:21943136 Mch6g1072 Mch-Chr6:7712561 1.32E-248 dispersed
Mch6g1072 Mch-Chr6:7712561 Mch6g1127 Mch-Chr6:8455604 3.29E-37 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43567 PF04873 EIN3 9.60E-130 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1072 K14514 - csv:101206055 1129.01