Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1074 ATGTTTGGGATCGTCATGGCAGAGGCGGTGGCAATGGTGGCGCTCGGGTGGTTGTTGTGTGGAGTTGAGGGTAGAGATCCGATGCTCCATAGGGTTGGAGGAGGAAAATACACTTGGGCGCCTAATGTTAACTTCACTGATTGGTCGATTCACGAGCACTTCTACGTTGGTGATTGGCTTTATTTTGGGTTCGATAAGCATATCTACAACGTGCTGGAAGTGAACGAGACGAGCTACGAGAGTTGCAACGAGAAGGATTTCATTTTCAACATCACAAGGGGAGGCAGAGATGTGTTCAATCTAACACAAGCAAAGCCATACTACTTTCTAAGTGGGAGAGGCTTTTGCTATCAAGGAATGAAACTTGCTGTTTTTGTTGAAGAATCTCCTCCAAATAATAATTCACCACCAAATCTCCCCAAAATGTCCAACCTCTCTCCATCTATATTACAACCACTATTTTCTCTCCCCCTCTTGCTATTCACCATTATTGCTAATTTTATTTCCTTCTTCTAA 516 43.6 MFGIVMAEAVAMVALGWLLCGVEGRDPMLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7723532 7727775 + MC06g0917 Mch6g1074 690521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1074 171 PANTHER BLUE COPPER PROTEIN 15 127 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Mch6g1074 171 Pfam Plastocyanin-like domain 39 120 IPR003245 GO:0009055(InterPro)
Mch6g1074 171 SUPERFAMILY Cupredoxins 30 126 IPR008972 -
Mch6g1074 171 ProSiteProfiles Phytocyanin domain profile. 28 128 IPR003245 GO:0009055(InterPro)
Mch6g1074 171 Gene3D - 28 130 IPR008972 -
Mch6g1074 171 FunFam Lamin-like protein 26 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1074 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1074 Mch-Chr6:7723532 Mch8g2440 Mch-Chr8:27389124 2.37E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch8g0503 . 11 171 Phytocyanin Superfamily AT5G25090 51.2 1.4e-38 156.4
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch6g1074 . 26 131 Phytocyanin Superfamily AT2G27035 61.3 2.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49