Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1101 ATGGAAGACGAAGCTTCTTCCAGCTTGCTCTCCCATGTCAAGACTCACCAGCCGGCCGACGAAGCCTCGGATTCCAATTTCTCCGATTGCGCCCTGCCCGCCGCCAAGCGCCCCCGGTTGGTCCACGATCTTAACGTTCTCGCCGCCGTCGGCAAATTCAAAGGCGTTGTGCCGCAGCATAACGGGCGCTGGGGCGCGCAGATCTACGCCAATCACCAGAGGATCTGGCTCGGTACCTTCAAATCGGAGAGAGACGCCGCCATGGCTTACGACAGCGCCGCTATCAAGCTCCGCACCAGAGATTCCCACCGGAATTTCCCCTGGACTCGCCGGTCAATCGAGGAGCCGAATTTTCAAATCAATTTTTCCACCGACGCCGTGTTGAGCATGATCAAAGACGGATCGTATTCCTCGAAATTCTCCGCCTATTTGAGAACGAAATCTCAAATTCACGACTCGGATTTCCAGAATCCGCGAAGCGGCTTCGAGAATGGCGACGGCGACGGCCATTTCTCCTGCAGCCATCTGTTCCAGAAGGAATTAACGCCGAGCGACGTCGGGAAGCTCAATCGGCTCGTCATCCCTAAAAAATACGCTGTGAAACACTTCCCGTACATCAGCGAGAGCGCAGACGAAAACGGCGACGACATCGAAATCGTGTTCTACGACACGGCGATGAAGACATGGAAGTTCCGATACTGCTACTGGAGGAGCAGCCAGAGCTTCGTGTTCACCAGAGGCTGGAATCGATTCGTGAAGGAGAAGAAGCTGAAGGCGAACGACATCATCACGTTCTACACATACGAGAGCTGCGGCGGAGGATCAGACGAAAATGGCGGAAGCGTAACACTGAACTTCATAGACGTGATCTACAAGAAATCAGAGGATCGTGAGAGCGAGAGTAGTTGCTTAGCGGACAAGAATGAGAAATTGCAGAGTGGATTAGGGCTTAATCGGGAGAAGGACTGTGGGAAGAAGAAGAAGGAGGTGGAGGAGATTTTAAACAGTGGAGTGATGAACCCTAATGAGGAAAAAATTGGGGAAAAGCGAATTAGGCTATTTGGAGTTCATATTGAT 1077 52.37 MEDEASSSLLSHVKTHQPADEASDSNFSDCALPAAKRPRLVHDLNVLAAVGKFKGVVPQHNGRWGAQIYANHQRIWLGTFKSERDAAMAYDSAAIKLRTRDSHRNFPWTRRSIEEPNFQINFSTDAVLSMIKDGSYSSKFSAYLRTKSQIHDSDFQNPRSGFENGDGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESADENGDDIEIVFYDTAMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGGGSDENGGSVTLNFIDVIYKKSEDRESESSCLADKNEKLQSGLGLNREKDCGKKKKEVEEILNSGVMNPNEEKIGEKRIRLFGVHID 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8033419 8034495 + MC06g0938 Mch6g1101 690548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1101 359 Gene3D - 166 280 IPR015300 -
Mch6g1101 359 FunFam AP2 domain-containing protein RAP2.8 51 108 - -
Mch6g1101 359 CDD AP2 52 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1101 359 SUPERFAMILY DNA-binding pseudobarrel domain 175 269 IPR015300 -
Mch6g1101 359 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 52 358 IPR044800 GO:0003700(InterPro)
Mch6g1101 359 MobiDBLite consensus disorder prediction 10 24 - -
Mch6g1101 359 SMART B3_2 177 290 IPR003340 GO:0003677(InterPro)
Mch6g1101 359 Pfam B3 DNA binding domain 177 267 IPR003340 GO:0003677(InterPro)
Mch6g1101 359 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677(InterPro)
Mch6g1101 359 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1101 359 MobiDBLite consensus disorder prediction 1 27 - -
Mch6g1101 359 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1101 359 ProSiteProfiles B3 DNA-binding domain profile. 177 290 IPR003340 GO:0003677(InterPro)
Mch6g1101 359 SMART rav1_2 52 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1101 359 CDD B3_DNA 175 266 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1101 K09287 - - csv:101219913 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0632 Mch-Chr6:4308951 Mch6g1101 Mch-Chr6:8033419 9.85E-105 dispersed
Mch6g1101 Mch-Chr6:8033419 Mch9g1988 Mch-Chr9:21216481 4.38E-55 dispersed
Mch6g1101 Mch-Chr6:8033419 Mch4g0163 Mch-Chr4:1107202 5.17E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1579 . 25 142 RAV Transcription Factor Family AT2G36080 75.4 2.5e-50 195.3
Mch10g0821 . 36 142 RAV Transcription Factor Family AT2G36080 71.2 5.3e-40 161.0
Mch6g2382 . 19 128 RAV Transcription Factor Family AT2G36080 68.1 1.0e-38 156.8
Mch9g1988 . 179 292 RAV Transcription Factor Family AT2G36080 63.8 4.2e-37 151.4
Mch6g2382 . 19 137 RAV Transcription Factor Family AT2G46870 86.7 6.5e-57 218.0
Mch10g0821 . 36 287 RAV Transcription Factor Family AT2G46870 51.9 2.1e-55 213.0
Mch5g1579 . 14 135 RAV Transcription Factor Family AT2G46870 62.4 8.0e-39 157.9
Mch9g1988 . 185 292 RAV Transcription Factor Family AT2G46870 70.3 8.0e-39 157.9
Mch5g1579 . 16 143 RAV Transcription Factor Family AT3G11580 64.7 2.3e-46 182.6
Mch10g0821 . 36 142 RAV Transcription Factor Family AT3G11580 63.0 2.9e-38 155.6
Mch6g2382 . 19 130 RAV Transcription Factor Family AT3G11580 61.0 5.0e-38 154.8
Mch6g2382 . 19 143 RAV Transcription Factor Family AT3G61970 77.3 1.0e-51 200.7
Mch9g1988 . 185 292 RAV Transcription Factor Family AT3G61970 70.0 1.0e-38 157.5
Mch6g2382 . 20 135 RAV Transcription Factor Family AT4G01500 67.5 2.4e-41 166.4
Mch10g0821 . 37 142 RAV Transcription Factor Family AT4G01500 66.4 2.5e-38 156.4
Mch5g1579 . 27 208 RAV Transcription Factor Family AT5G06250 57.4 2.8e-48 189.1
Mch10g0821 . 37 142 RAV Transcription Factor Family AT5G06250 69.2 5.6e-41 164.9
Mch6g2382 . 20 128 RAV Transcription Factor Family AT5G06250 63.9 1.5e-38 156.8
Mch9g1988 . 185 292 RAV Transcription Factor Family AT5G06250 63.2 8.4e-37 151.0
Mch6g0632 . 45 340 RAV Transcription Factor Family AT1G50680 53.4 2.8e-85 312.4
Mch6g0632 . 41 340 RAV Transcription Factor Family AT1G51120 52.7 3.8e-85 312.0
Mch6g1101 . 52 289 RAV Transcription Factor Family AT1G51120 59.6 1.2e-78 290.4
Mch9g1988 . 44 349 RAV Transcription Factor Family AT1G13260 65.2 4.3e-102 368.2
Mch6g2382 . 21 134 RAV Transcription Factor Family AT1G13260 68.7 1.3e-37 154.1
Mch10g0821 . 34 142 RAV Transcription Factor Family AT1G13260 69.4 1.3e-37 154.1
Mch5g1579 . 27 147 RAV Transcription Factor Family AT1G13260 63.6 3.7e-37 152.5
Mch9g1988 . 44 350 RAV Transcription Factor Family AT3G25730 61.6 1.0e-92 337.0
Mch5g1579 . 29 136 RAV Transcription Factor Family AT3G25730 66.7 3.6e-37 152.5
Mch10g0821 . 34 142 RAV Transcription Factor Family AT3G25730 66.4 1.0e-36 151.0
Mch9g1988 . 1 350 RAV Transcription Factor Family AT1G68840 58.4 1.7e-106 382.9
Mch6g2382 . 20 136 RAV Transcription Factor Family AT1G68840 67.2 3.4e-38 156.0
Mch10g0821 . 37 142 RAV Transcription Factor Family AT1G68840 69.7 4.5e-38 155.6
Mch5g1579 . 29 136 RAV Transcription Factor Family AT1G68840 69.4 6.5e-37 151.8
Mch9g1988 . 44 350 RAV Transcription Factor Family AT3G25730 61.6 1.0e-92 337.0
Mch5g1579 . 29 136 RAV Transcription Factor Family AT3G25730 66.7 3.6e-37 152.5
Mch10g0821 . 34 142 RAV Transcription Factor Family AT3G25730 66.4 1.0e-36 151.0
Mch6g0632 . 41 340 RAV Transcription Factor Family AT1G51120 52.7 3.8e-85 312.0
Mch6g1101 . 52 289 RAV Transcription Factor Family AT1G51120 59.6 1.2e-78 290.4
Mch5g1579 . 16 143 RAV Transcription Factor Family AT3G11580 64.7 2.3e-46 182.6
Mch10g0821 . 36 142 RAV Transcription Factor Family AT3G11580 63.0 2.9e-38 155.6
Mch6g2382 . 19 130 RAV Transcription Factor Family AT3G11580 61.0 5.0e-38 154.8
Mch6g2382 . 20 135 RAV Transcription Factor Family AT4G01500 67.5 2.4e-41 166.4
Mch10g0821 . 37 142 RAV Transcription Factor Family AT4G01500 66.4 2.5e-38 156.4
Mch5g1579 . 25 142 RAV Transcription Factor Family AT2G36080 75.4 2.5e-50 195.3
Mch10g0821 . 36 142 RAV Transcription Factor Family AT2G36080 71.2 5.3e-40 161.0
Mch6g2382 . 19 128 RAV Transcription Factor Family AT2G36080 68.1 1.0e-38 156.8
Mch9g1988 . 179 292 RAV Transcription Factor Family AT2G36080 63.8 4.2e-37 151.4
Mch5g1579 . 27 208 RAV Transcription Factor Family AT5G06250 57.4 2.8e-48 189.1
Mch10g0821 . 37 142 RAV Transcription Factor Family AT5G06250 69.2 5.6e-41 164.9
Mch6g2382 . 20 128 RAV Transcription Factor Family AT5G06250 63.9 1.5e-38 156.8
Mch9g1988 . 185 292 RAV Transcription Factor Family AT5G06250 63.2 8.4e-37 151.0
Mch6g2382 . 19 137 RAV Transcription Factor Family AT2G46870 86.7 6.5e-57 218.0
Mch10g0821 . 36 287 RAV Transcription Factor Family AT2G46870 51.9 2.1e-55 213.0
Mch5g1579 . 14 135 RAV Transcription Factor Family AT2G46870 62.4 8.0e-39 157.9
Mch9g1988 . 185 292 RAV Transcription Factor Family AT2G46870 70.3 8.0e-39 157.9
Mch6g0632 . 45 340 RAV Transcription Factor Family AT1G50680 53.4 2.8e-85 312.4
Mch6g2382 . 19 143 RAV Transcription Factor Family AT3G61970 77.3 1.0e-51 200.7
Mch9g1988 . 185 292 RAV Transcription Factor Family AT3G61970 70.0 1.0e-38 157.5
Mch9g1988 . 44 349 RAV Transcription Factor Family AT1G13260 65.2 4.3e-102 368.2
Mch6g2382 . 21 134 RAV Transcription Factor Family AT1G13260 68.7 1.3e-37 154.1
Mch10g0821 . 34 142 RAV Transcription Factor Family AT1G13260 69.4 1.3e-37 154.1
Mch5g1579 . 27 147 RAV Transcription Factor Family AT1G13260 63.6 3.7e-37 152.5
Mch9g1988 . 1 350 RAV Transcription Factor Family AT1G68840 58.4 1.7e-106 382.9
Mch6g2382 . 20 136 RAV Transcription Factor Family AT1G68840 67.2 3.4e-38 156.0
Mch10g0821 . 37 142 RAV Transcription Factor Family AT1G68840 69.7 4.5e-38 155.6
Mch5g1579 . 29 136 RAV Transcription Factor Family AT1G68840 69.4 6.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43570 PF02362 B3 1.80E-26 CL0405 Mch TF