Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g1101 | ATGGAAGACGAAGCTTCTTCCAGCTTGCTCTCCCATGTCAAGACTCACCAGCCGGCCGACGAAGCCTCGGATTCCAATTTCTCCGATTGCGCCCTGCCCGCCGCCAAGCGCCCCCGGTTGGTCCACGATCTTAACGTTCTCGCCGCCGTCGGCAAATTCAAAGGCGTTGTGCCGCAGCATAACGGGCGCTGGGGCGCGCAGATCTACGCCAATCACCAGAGGATCTGGCTCGGTACCTTCAAATCGGAGAGAGACGCCGCCATGGCTTACGACAGCGCCGCTATCAAGCTCCGCACCAGAGATTCCCACCGGAATTTCCCCTGGACTCGCCGGTCAATCGAGGAGCCGAATTTTCAAATCAATTTTTCCACCGACGCCGTGTTGAGCATGATCAAAGACGGATCGTATTCCTCGAAATTCTCCGCCTATTTGAGAACGAAATCTCAAATTCACGACTCGGATTTCCAGAATCCGCGAAGCGGCTTCGAGAATGGCGACGGCGACGGCCATTTCTCCTGCAGCCATCTGTTCCAGAAGGAATTAACGCCGAGCGACGTCGGGAAGCTCAATCGGCTCGTCATCCCTAAAAAATACGCTGTGAAACACTTCCCGTACATCAGCGAGAGCGCAGACGAAAACGGCGACGACATCGAAATCGTGTTCTACGACACGGCGATGAAGACATGGAAGTTCCGATACTGCTACTGGAGGAGCAGCCAGAGCTTCGTGTTCACCAGAGGCTGGAATCGATTCGTGAAGGAGAAGAAGCTGAAGGCGAACGACATCATCACGTTCTACACATACGAGAGCTGCGGCGGAGGATCAGACGAAAATGGCGGAAGCGTAACACTGAACTTCATAGACGTGATCTACAAGAAATCAGAGGATCGTGAGAGCGAGAGTAGTTGCTTAGCGGACAAGAATGAGAAATTGCAGAGTGGATTAGGGCTTAATCGGGAGAAGGACTGTGGGAAGAAGAAGAAGGAGGTGGAGGAGATTTTAAACAGTGGAGTGATGAACCCTAATGAGGAAAAAATTGGGGAAAAGCGAATTAGGCTATTTGGAGTTCATATTGAT | 1077 | 52.37 | MEDEASSSLLSHVKTHQPADEASDSNFSDCALPAAKRPRLVHDLNVLAAVGKFKGVVPQHNGRWGAQIYANHQRIWLGTFKSERDAAMAYDSAAIKLRTRDSHRNFPWTRRSIEEPNFQINFSTDAVLSMIKDGSYSSKFSAYLRTKSQIHDSDFQNPRSGFENGDGDGHFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESADENGDDIEIVFYDTAMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGGGSDENGGSVTLNFIDVIYKKSEDRESESSCLADKNEKLQSGLGLNREKDCGKKKKEVEEILNSGVMNPNEEKIGEKRIRLFGVHID | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 8033419 | 8034495 | + | MC06g0938 | Mch6g1101 | 690548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g1101 | 359 | Gene3D | - | 166 | 280 | IPR015300 | - | |
| Mch6g1101 | 359 | FunFam | AP2 domain-containing protein RAP2.8 | 51 | 108 | - | - | |
| Mch6g1101 | 359 | CDD | AP2 | 52 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch6g1101 | 359 | SUPERFAMILY | DNA-binding pseudobarrel domain | 175 | 269 | IPR015300 | - | |
| Mch6g1101 | 359 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 52 | 358 | IPR044800 | GO:0003700(InterPro) | |
| Mch6g1101 | 359 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
| Mch6g1101 | 359 | SMART | B3_2 | 177 | 290 | IPR003340 | GO:0003677(InterPro) | |
| Mch6g1101 | 359 | Pfam | B3 DNA binding domain | 177 | 267 | IPR003340 | GO:0003677(InterPro) | |
| Mch6g1101 | 359 | SUPERFAMILY | DNA-binding domain | 52 | 108 | IPR016177 | GO:0003677(InterPro) | |
| Mch6g1101 | 359 | Gene3D | AP2/ERF domain | 52 | 108 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch6g1101 | 359 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Mch6g1101 | 359 | ProSiteProfiles | AP2/ERF domain profile. | 52 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch6g1101 | 359 | ProSiteProfiles | B3 DNA-binding domain profile. | 177 | 290 | IPR003340 | GO:0003677(InterPro) | |
| Mch6g1101 | 359 | SMART | rav1_2 | 52 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch6g1101 | 359 | CDD | B3_DNA | 175 | 266 | IPR003340 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g0632 | Mch-Chr6:4308951 | Mch6g1101 | Mch-Chr6:8033419 | 9.85E-105 | dispersed | |
| Mch6g1101 | Mch-Chr6:8033419 | Mch9g1988 | Mch-Chr9:21216481 | 4.38E-55 | dispersed | |
| Mch6g1101 | Mch-Chr6:8033419 | Mch4g0163 | Mch-Chr4:1107202 | 5.17E-10 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43570 | PF02362 | B3 | 1.80E-26 | CL0405 | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch6g1101 | K09287 | - | csv:101219913 | 555.829 |