Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1103 ATGAGGCCTGTCAAACGCGAACCCGCTGCCACCAACCGTGGTGCCCAGAGTAGAGTCGCCGCCGCCGATGCTGCGAGTTTCAGGGATGTTCACCGGGAGAGAGTTGCTATGGAGCGAGATAACTCCGGCGAGGACAACTCCACTGAAGAAGAAGAGGGTCCGCAGGACTTGACGAAGCGGCGGGTGCTGCGGTCTCGGTACCTCGCGGTCATTCATGAGATTAGTGAAAGGAGAGAAGATTTGTCGAAGGATTTGGATAAGTTTAATGTAATCATCAATGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAGGTTGCAGATGCAGAAGCTTTGCAAGATATTGCAAACTCCCTCGTGACATCTATAAGGTCGCAGTCAAATGAAGGTGTTACTCCATCGGATTTTGTTAGTTGTCTGCTCAGAGAGTTTGCCCAGATTGGCAATGGAGTAACTTCTGAAGAAAATGATATGGTTTCTGTCAGTTGGAAAGATATTGGGCGTGGTGTTTCATCTATTTTCATGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGCACTCAGTTGAAACAGCGAAAGACTAATAATATTTCCAGGAAACGTTCCAAGCCTACTGAAAGTTCGAGACCTGCAGAGGTTGAAGAAAATGGATCTGAAAAAAAAACTGATACAGACAAGAACATGAGCATAATGTTTGTAGCTTTGAGGAGGAATAAAAGGGTTAAACTTGAACATTTGATATTGAATAGAAGGTCTTTTGCACAGACAGTAGAAAACTTGTTTGCTCTATCATTTCTCGTTAAGGATGGTCGGGCTGAGATAACTATCGATAAAAATGGCTCTCATTTTGTGTCACCAAAGAATGCCCCTGCCCACAGTTCCATTATGTCACATGAAGTTAGTTACAGTCATTTTGTATTCAGATTCGATTTCAAAGACTGGAAGCTAATGGCGAGCAAGGTACCAGTTGGAGAGGAGTTGATGCCTCACAGGGACTTTCTGAACTCAGCACCGCCACCGCAAGCAGAAGCATCAGCAGGCGATGATTCTGAAGCAGTGGGCTTACCCACTACTCCAATCCGGAAGCTGTCGAGAAATCGAGGTTTAGTCGTGCAATCTGTGGTTGAAGATTCTCCTGACAATGACACTCATTCAGGACCAACTGCAATTTTGAGGTGTAAGAGGAAGCTCAGTCAAGGTTTGGTAAATTAG 1227 45.48 MRPVKREPAATNRGAQSRVAAADAASFRDVHRERVAMERDNSGEDNSTEEEEGPQDLTKRRVLRSRYLAVIHEISERREDLSKDLDKFNVIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFAQIGNGVTSEENDMVSVSWKDIGRGVSSIFMNGHGCCTMLGPMSTQLKQRKTNNISRKRSKPTESSRPAEVEENGSEKKTDTDKNMSIMFVALRRNKRVKLEHLILNRRSFAQTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSSIMSHEVSYSHFVFRFDFKDWKLMASKVPVGEELMPHRDFLNSAPPPQAEASAGDDSEAVGLPTTPIRKLSRNRGLVVQSVVEDSPDNDTHSGPTAILRCKRKLSQGLVN 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8043937 8047759 - MC06g0940 Mch6g1103 690550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1103 408 PANTHER UNCHARACTERIZED 36 374 IPR027786 GO:0005634(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Mch6g1103 408 MobiDBLite consensus disorder prediction 1 58 - -
Mch6g1103 408 Pfam Nse4 C-terminal 246 333 IPR014854 -
Mch6g1103 408 MobiDBLite consensus disorder prediction 338 361 - -
Mch6g1103 408 MobiDBLite consensus disorder prediction 25 43 - -
Mch6g1103 408 MobiDBLite consensus disorder prediction 204 228 - -
Mch6g1103 408 MobiDBLite consensus disorder prediction 188 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1103 K22825 - - csv:101220149 629.787
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1103 . 55 403 Non-SMC Element family AT1G51130 57.7 8.6e-102 367.5
Mch6g1103 . 50 383 Non-SMC Element family AT3G20760 51.8 5.2e-88 321.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35