Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1159 TTCAAAGGGTTTGAAGGTATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGAATCTGATCCAAATGGTGCGCCGTCCACAAGTCTCTATTACGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCCTTGCCTGTGGTAGGGGGAAATGTTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGTCAGTCTGTGTCTAATAATGATTTAAACGATGAAGAAGATGATGTTACCAAAGAAGTGCAAGCTACTGGATCCCCACATTCTGCTGGAAGCTACAGACTGGATGCTCAAAAGATGCAGCATGTTTCATCCACTCTGCCAGCTATGCACGGTGAATGTCCGACGCAGTCTACACAACTCGAACTTGTTGGCCACTCTATTGCATGTGCATCAAATCCATATCAGGACCCATATTATGGAGGAATGATGGCTTTTTATGGTCACCAGCCCTTGGGATATCCTATGGTTGGAGCACCGCATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCTAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTCCATGAATCTAGACACCAGCATGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTTGCCAAGAAAGACGAAGCTAATGAAAACGAGATGCATTCTGACAAAGCAAACGAGAGTGGTTACTGCCTAAACGACGGTTCCGAACAGCGAAATGGAAGTTCATCGATGAACAAGGCCTCTCAGTAG 834 46.04 FKGFEGMQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNVSSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8751756 8754883 + MC06g0979 Mch6g1159 690606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1159 277 MobiDBLite consensus disorder prediction 256 277 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 7 26 - -
Mch6g1159 277 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 MobiDBLite consensus disorder prediction 48 75 - -
Mch6g1159 277 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 271 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch6g1159 277 SMART cbf3 178 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 Gene3D - 179 241 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 218 277 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 233 251 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 218 232 - -
Mch6g1159 277 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Mch6g1159 277 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 MobiDBLite consensus disorder prediction 1 28 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 46 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1159 K08064 - - csv:101212860 474.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3234 Mch-Chr8:34361047 Mch6g1159 Mch-Chr6:8751756 6.20E-32 transposed
Mch2g0147 Mch-Chr2:1108745 Mch6g1159 Mch-Chr6:8751756 2.32E-95 wgd
Mch6g1159 Mch-Chr6:8751756 Mch9g0559 Mch-Chr9:4082808 1.38E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0147 . 29 284 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.3 9.7e-57 217.2
Mch2g0147 . 116 356 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 2.6e-50 196.1
Mch6g1159 . 3 239 CCAAT-HAP2 Transcription Factor Family AT3G20910 53.3 5.4e-48 188.3
Mch1g2090 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.7 3.4e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43574 PF02045 CBFB_NFYA 2.10E-26 No_clan Mch TF