Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1159 TTCAAAGGGTTTGAAGGTATGCAGTCAAAGTCTGAAACCAATAATCAGCTCGAATCTGATCCAAATGGTGCGCCGTCCACAAGTCTCTATTACGAACCCTGGTGGCGTGGTATTGGGTACAATCCTATTCCCTTGCCTGTGGTAGGGGGAAATGTTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGTCAGTCTGTGTCTAATAATGATTTAAACGATGAAGAAGATGATGTTACCAAAGAAGTGCAAGCTACTGGATCCCCACATTCTGCTGGAAGCTACAGACTGGATGCTCAAAAGATGCAGCATGTTTCATCCACTCTGCCAGCTATGCACGGTGAATGTCCGACGCAGTCTACACAACTCGAACTTGTTGGCCACTCTATTGCATGTGCATCAAATCCATATCAGGACCCATATTATGGAGGAATGATGGCTTTTTATGGTCACCAGCCCTTGGGATATCCTATGGTTGGAGCACCGCATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTTGTGAATGCTAAGCAGTACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTTGATAAAAGCCAGAAAGCCATACCTCCATGAATCTAGACACCAGCATGCCATAAGAAGGACGAGGGGTAGTGGAGGGCGTTTTGCCAAGAAAGACGAAGCTAATGAAAACGAGATGCATTCTGACAAAGCAAACGAGAGTGGTTACTGCCTAAACGACGGTTCCGAACAGCGAAATGGAAGTTCATCGATGAACAAGGCCTCTCAGTAG 834 46.04 FKGFEGMQSKSETNNQLESDPNGAPSTSLYYEPWWRGIGYNPIPLPVVGGNVSSSTSLEFPNGGSESNDGQSVSNNDLNDEEDDVTKEVQATGSPHSAGSYRLDAQKMQHVSSTLPAMHGECPTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRTRGSGGRFAKKDEANENEMHSDKANESGYCLNDGSEQRNGSSSMNKASQ 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8751756 8754883 + MC06g0979 Mch6g1159 690606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1159 277 MobiDBLite consensus disorder prediction 256 277 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 7 26 - -
Mch6g1159 277 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 MobiDBLite consensus disorder prediction 48 75 - -
Mch6g1159 277 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 271 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch6g1159 277 SMART cbf3 178 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 Gene3D - 179 241 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 218 277 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 233 251 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 218 232 - -
Mch6g1159 277 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Mch6g1159 277 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1159 277 MobiDBLite consensus disorder prediction 1 28 - -
Mch6g1159 277 MobiDBLite consensus disorder prediction 46 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3234 Mch-Chr8:34361047 Mch6g1159 Mch-Chr6:8751756 6.20E-32 transposed
Mch2g0147 Mch-Chr2:1108745 Mch6g1159 Mch-Chr6:8751756 2.32E-95 wgd
Mch6g1159 Mch-Chr6:8751756 Mch9g0559 Mch-Chr9:4082808 1.38E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43574 PF02045 CBFB_NFYA 2.10E-26 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1159 K08064 - csv:101212860 474.167