Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1282 ATGGCTACTCAGGCACTTGTATCATCTTCTTTAACCTCTTCAGTTGGTGCAGCCAGACACAGATTTGGGGCAAGACCCTCCTTTGGATCCTCTAGAAAATCAGCTTCCTTTGTTGTCAGAGCTGAAGCCACCCCTCCCGTTAAGCAAGGGGCAAATAGACAACTATGGTTCGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCAGGCGACTACGGATTCGATCCACTGGGGCTATCGGACCCAGAAGGAACCGGAGGGTTCATCGAGCCAAAATGGTTAGCCTACGGCGAGGTGATCAATGGGCGGTACGCGATGTTAGGAGTAGTAGGAGCCATAGCCCCAGAGATCCTAGGATCCCTAGGGCTAATCCCCCCAGAAACAGCCCTCCCATGGTTCAAAACAGGAGTGATCCCTCCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACTCTCTTTGTTTTCGAGATGGCCCTAATGGGCTTTGCAGAGCACAGAAGGTTCCAGGATTGGGCCAACCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGCCTGGAGAAGTTCTTGGGTGGGTCAGGAGAGCCAGCATACCCTGGTGGGCCTCTGTTCAACCCATTAGGGTTTGGTAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAGGTGAAGAATGGGAGGCTGGCCATGTTGGCAATTTTGGGCTTCTTTGTACAGGGCCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGACCACTTGTCTGACCCTGTCAACAACAATGTTTTGACAAGCCTTAAGTTCCATTAG 822 51.09 MATQALVSSSLTSSVGAARHRFGARPSFGSSRKSASFVVRAEATPPVKQGANRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGVVGAIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKFLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGFFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10317379 10319554 - MC06g1060 Mch6g1282 690729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1282 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
Mch6g1282 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Mch6g1282 273 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Mch6g1282 273 Pfam Chlorophyll A-B binding protein 64 243 IPR022796 -
Mch6g1282 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 15 268 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1282 Mch-Chr6:10317379 Mch8g0688 Mch-Chr8:4936327 3.62E-55 dispersed
Mch6g1282 Mch-Chr6:10317379 Mch6g0241 Mch-Chr6:1588441 6.93E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1282 K08909 - csv:101202993 517.309