Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1311 ATGACCATGGGTGTTTCAGGAAAATGGTTCAAAGCTTTAGTTGGTTCAAAGAAATCTGAAAAATCTCAGTCTTCAGAAAATGATGAAAATGCGAGGACAGTCAATAACAAGTTTTGGCATCGGAGAAAGCATTCTGTCGATATAGATGCTGAAAAACTTCAGCATGATTTTCATTCTAATTTTACCCCATTTGTTGGAGAGTCCTGCACTCTTTCGGATCCTGAAGTTGCTACTATTCTTTCTGATTCGCTTCAAACATGTGATGCATTGCAAAGTCGTCAGAACAATATAGAAGAACAGGCTGCCATACGCATCCAAACAATGTTTAGAGGATTTCTGGCCAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTTCGCTGTATGCAAGCTTTAGTGAGAGTACAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAGAGTGAAACCGCACAACAAAAACTGCAACAACATCTTGAAAATCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTTGGATCTGTTGAAGAAATTCAAACAAAATTATTGAAAAGGCAGGAGGCTGCAGCTAAACGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCATGGGAAAACCGCTTTCTCGATATTAATCTCAGAGATGGAGTGATGATTCGTGAAGACGGATCAGCTGAGGCCAAAAGTAACACTAAATCTCATCAAAGAACTACTGGCAAGAAAACAAACTTAGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACATTCTGATGGATGTGGTTCATCATCACCCTCTAAGTCAGCTGGCACTATAGAGGTATCTAGTGCACAGATTCAAAAGCCCAAGAATAAACTTGCCCCTGAGAGGCCATTTGAAGAAGTCAAATCTAGAGTTGATACTGGTTTAAGATCCCATAGCAATCCGAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCATGCCTAACAATGATCCTGGGAGTCAAAATCAAACCGTCAGGAATTCGAACAGAACTGCAGGCAAAGTGACCGCTACCAAGTCCATCAACGACAGACCCAAGTCGATTTCAAAGAAATCTGCTAAGCCC 1290 43.33 MTMGVSGKWFKALVGSKKSEKSQSSENDENARTVNNKFWHRRKHSVDIDAEKLQHDFHSNFTPFVGESCTLSDPEVATILSDSLQTCDALQSRQNNIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQHLENQARVREIEEGWCDSVGSVEEIQTKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIREDGSAEAKSNTKSHQRTTGKKTNLVTDQSNLSSQKTAASHSDGCGSSSPSKSAGTIEVSSAQIQKPKNKLAPERPFEEVKSRVDTGLRSHSNPKERSTPLVKNAKKRLSMPNNDPGSQNQTVRNSNRTAGKVTATKSINDRPKSISKKSAKP 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10866131 10873814 - MC06g1077 Mch6g1311 690758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1311 430 MobiDBLite consensus disorder prediction 288 344 - -
Mch6g1311 430 Gene3D - 98 140 - -
Mch6g1311 430 ProSiteProfiles IQ motif profile. 98 126 - -
Mch6g1311 430 SMART iq_5 97 119 IPR000048 GO:0005515(InterPro)
Mch6g1311 430 SMART iq_5 120 141 IPR000048 GO:0005515(InterPro)
Mch6g1311 430 MobiDBLite consensus disorder prediction 281 430 - -
Mch6g1311 430 PANTHER IQ-DOMAIN 5-RELATED 7 387 - -
Mch6g1311 430 ProSiteProfiles IQ motif profile. 122 149 - -
Mch6g1311 430 MobiDBLite consensus disorder prediction 348 369 - -
Mch6g1311 430 MobiDBLite consensus disorder prediction 388 418 - -
Mch6g1311 430 Pfam IQ calmodulin-binding motif 100 119 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1311 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1067 Mch-Chr10:7794760 Mch6g1311 Mch-Chr6:10866131 7.33E-33 dispersed
Mch1g0786 Mch-Chr1:11528501 Mch6g1311 Mch-Chr6:10866131 1.05E-28 dispersed
Mch4g2077 Mch-Chr4:22941834 Mch6g1311 Mch-Chr6:10866131 6.13E-34 dispersed
Mch5g1773 Mch-Chr5:18235496 Mch6g1311 Mch-Chr6:10866131 2.81E-26 dispersed
Mch6g1311 Mch-Chr6:10866131 Mch9g0244 Mch-Chr9:1837269 4.20E-29 dispersed
Mch6g1311 Mch-Chr6:10866131 Mch11g0421 Mch-Chr11:2644375 3.00E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42