Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1423 ATGAGGCTGGAAGTGAAGGACGATGATGGCGATGATGTTCTTGTTCCTCCCTCCAACTTCTCCATGGTCGAGGACGGCATTTTCCGATCTGGGTTCCCCCAGCCCCCCAATTTCCCCTTCCTCAAGACCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATCTGGAGTTTCTTAGAGCTAATAACATTAAGCTCTTTCAATTCAAAATTGAAGGGAAAAAGGAGCCATATGTTTCGATTCCGAAGGACGATATCCTGGAGGCTCTGAAAATCCTAATTGATTTCATCTCTTTTACTTTTTTTGTTGTTTATCTTGTGTTTTCAGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGGAAGCACCGAACCGGGTCACTCGTTGGCTGTCTAAGAAAGTTTCAGAACTGGTGCTTGACTTCGGTGTTTGAGGAGTACCAGAGGTTCGCAGGCATGAAGTCGAGGACGACGGATCTACAATTCATCGAGACATTCGACATTATGTCTCTGAGGCAATGTGTGTACAGCGTCATATACAAGTACCAAGGATACAGTTCTAAGAAGAGGAGGCTGCTGTATAGAGAAGAAAAGTTGCAGAAGCCTCAAACCACATCAGTTTAG 648 45.22 MRLEVKDDDGDDVLVPPSNFSMVEDGIFRSGFPQPPNFPFLKTLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGKKEPYVSIPKDDILEALKILIDFISFTFFVVYLVFSDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGMKSRTTDLQFIETFDIMSLRQCVYSVIYKYQGYSSKKRRLLYREEKLQKPQTTSV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12780133 12782524 - MC06g1142 Mch6g1423 690870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1423 215 FunFam probable tyrosine-protein phosphatase At1g05000 13 178 - -
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 Pfam Tyrosine phosphatase family 14 177 IPR004861 -
Mch6g1423 215 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 175 IPR029021 -
Mch6g1423 215 Gene3D Protein tyrosine phosphatase superfamily 13 178 IPR029021 -
Mch6g1423 215 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 205 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Mch6g1423 215 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 185 IPR020422 GO:0006470(InterPro)
Mch6g1423 215 CDD PFA-DSP_Siw14 14 175 - -
Mch6g1423 215 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0093 Mch-Chr4:621199 Mch6g1423 Mch-Chr6:12780133 2.37E-69 dispersed
Mch6g1423 Mch-Chr6:12780133 Mch2g0685 Mch-Chr2:4675647 3.11E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1423 K18045 - csv:101211082 349.362