Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1423 ATGAGGCTGGAAGTGAAGGACGATGATGGCGATGATGTTCTTGTTCCTCCCTCCAACTTCTCCATGGTCGAGGACGGCATTTTCCGATCTGGGTTCCCCCAGCCCCCCAATTTCCCCTTCCTCAAGACCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATCTGGAGTTTCTTAGAGCTAATAACATTAAGCTCTTTCAATTCAAAATTGAAGGGAAAAAGGAGCCATATGTTTCGATTCCGAAGGACGATATCCTGGAGGCTCTGAAAATCCTAATTGATTTCATCTCTTTTACTTTTTTTGTTGTTTATCTTGTGTTTTCAGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGGAAGCACCGAACCGGGTCACTCGTTGGCTGTCTAAGAAAGTTTCAGAACTGGTGCTTGACTTCGGTGTTTGAGGAGTACCAGAGGTTCGCAGGCATGAAGTCGAGGACGACGGATCTACAATTCATCGAGACATTCGACATTATGTCTCTGAGGCAATGTGTGTACAGCGTCATATACAAGTACCAAGGATACAGTTCTAAGAAGAGGAGGCTGCTGTATAGAGAAGAAAAGTTGCAGAAGCCTCAAACCACATCAGTTTAG 648 45.22 MRLEVKDDDGDDVLVPPSNFSMVEDGIFRSGFPQPPNFPFLKTLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGKKEPYVSIPKDDILEALKILIDFISFTFFVVYLVFSDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGMKSRTTDLQFIETFDIMSLRQCVYSVIYKYQGYSSKKRRLLYREEKLQKPQTTSV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12780133 12782524 - MC06g1142 Mch6g1423 690870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1423 215 FunFam probable tyrosine-protein phosphatase At1g05000 13 178 - -
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791(InterPro)
Mch6g1423 215 Pfam Tyrosine phosphatase family 14 177 IPR004861 -
Mch6g1423 215 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 175 IPR029021 -
Mch6g1423 215 Gene3D Protein tyrosine phosphatase superfamily 13 178 IPR029021 -
Mch6g1423 215 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 205 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Mch6g1423 215 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 185 IPR020422 GO:0006470(InterPro)
Mch6g1423 215 CDD PFA-DSP_Siw14 14 175 - -
Mch6g1423 215 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1423 K18045 - - csv:101211082 349.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0093 Mch-Chr4:621199 Mch6g1423 Mch-Chr6:12780133 2.37E-69 dispersed
Mch6g1423 Mch-Chr6:12780133 Mch2g0685 Mch-Chr2:4675647 3.11E-71 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008556 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35