Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1426 GATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAGCCAGATTGTTCTTACTACATCAGAACAGGCTTGTGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGTTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCGGAATGTCAGGCATTATACCTGAAGACGGGAACTTGCAAGTTTGGGGCTACATGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAATGAAACTGAATGTTCTTATTATTTAAGAACTGGTCAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCACTGCGTGGTTCACCTATTTATCCATCCGTACAATCACCAACTCCTGGTCAGCAGTCATATCCAGGAGGAAGTACAAATTGGTCAAGGGCTTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGATCAACTAGGATCTGTTTCATCTTCAGAAAGTCCACAACAAACGGTGGGGCATAGATCTTTAGCAGTCTCTTCTCTGATATGTTCTAACTGTCCCTTTTGGGGTTTTGCATTGCAGAGGGAGAATGTATTTCCTGAGAGGCCCGGCCAGCCTGAATGTCAATTTTACATGAAGACTGGAGATTGCAAGTTCGGGGCTGTTTGTCGGTTTCATCATCCTAGAGAGAGAGTAATTCCTGCTCCAGATTGCGTCTTGAGTCCAATAGGCCTGCCATTACGTCAGGGAGAACCTTTGTGCATCTTTTATTCCCGTTATGGGATCTGTAAGTTTGGTCCGAGCTGCAAGTTTGATCACCCTATGGGAATCTTTGCATACAATCTCTCAGCAGCGTCATCGGCCAACGCCCCGGTTCAGCATTTGTTCGGGACGTCTTCAGGAACAACTGCTCTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTGCAAAGCCCAGGCGACTGTCACTCTCGGAGACTCGAGAGATGCCTTCCGATGATGAAAACATCGACGCTGAGGGCTGA 1197 45.86 DALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQALYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNETECSYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPSVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTVGHRSLAVSSLICSNCPFWGFALQRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRQGEPLCIFYSRYGICKFGPSCKFDHPMGIFAYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSLSETREMPSDDENIDAEG 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12910705 12922596 + MC06g1144 Mch6g1426 690873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1426 398 FunFam CCCH type zinc finger protein 256 341 - -
Mch6g1426 398 ProSiteProfiles Zinc finger C3H1-type profile. 67 96 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 ProSiteProfiles Zinc finger C3H1-type profile. 114 142 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Gene3D - 22 102 - -
Mch6g1426 398 Gene3D - 253 342 - -
Mch6g1426 398 FunFam Zinc finger nuclease 2 21 99 - -
Mch6g1426 398 ProSiteProfiles Zinc finger C3H1-type profile. 22 50 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 23 49 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 117 141 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 95 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 285 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 SUPERFAMILY CCCH zinc finger 262 287 IPR036855 GO:0046872(InterPro)
Mch6g1426 398 SMART c3hfinal6 22 49 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 SMART c3hfinal6 67 95 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 SMART c3hfinal6 258 285 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 SMART c3hfinal6 304 331 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 SMART c3hfinal6 114 141 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 Gene3D - 103 150 - -
Mch6g1426 398 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872(InterPro)
Mch6g1426 398 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872(InterPro)
Mch6g1426 398 PANTHER PROTEIN PHOSPHATASE RELATED 16 332 IPR050974 GO:0003729(PANTHER)
Mch6g1426 398 MobiDBLite consensus disorder prediction 371 398 - -
Mch6g1426 398 SUPERFAMILY CCCH zinc finger 115 142 IPR036855 GO:0046872(InterPro)
Mch6g1426 398 SUPERFAMILY CCCH zinc finger 27 50 IPR036855 GO:0046872(InterPro)
Mch6g1426 398 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1386 Mch-Chr3:16387333 Mch6g1426 Mch-Chr6:12910705 2.73E-25 dispersed
Mch4g0008 Mch-Chr4:85122 Mch6g1426 Mch-Chr6:12910705 1.21E-15 dispersed
Mch5g0689 Mch-Chr5:4650873 Mch6g1426 Mch-Chr6:12910705 1.57E-23 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43580 PF00642 zf-CCCH 3.10E-10 CL0537 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1426 - - - 0.0