Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1470 ATGCTCTACACTATTAAAAGTGGTGATAGTTATGAAAAGATAGCGCATGATGTTTTTCAAGGCTTGACGAGTTGTTCGGCGTTGAAAAATAAGAACCACGACTATCCCCTTGTCAATACTGCTGCGATAGGCAGAAGGCTCGAAGTTCCAATACGATGTGCTTGCCCTACCAAAGCTCAGATTGCTAGCAGGGTTCATTCTTTGATTGTGTATACGCTACAACTAAACGAGACCATTGGATCCGTGGCGAGGGCTTTTGGGGTTGAGGAGAAAAGCGTGTTGGAAGCGAATATGCTTTCAAATTGGAGCCACATATATCCATTTACGCCTATTTTGGTTCCATTGGGTAAAGATGACACTTGCAGAATATACCCTTACTCATTGGATTGCAGAGACATGTCTTCTTCTTTTTCAGACATTTTCTCGTACATTTTCCTGAACTTAGTCCTCATTCCAATAGCTGGTCTGATTGGATTAGCATGTTGTTTCTGTTGCGGATGCAAAGGGAATCAACTACTCTTGAAGAAAAGAAGGCGCAAACTTTATAAGAAAAAGTTTTTCAAACAAAATGGTGGCCACTTATTGCAGCAAAAACTACTTGAAGACAGTGAGAGAGTGAAAATATATACCCAAGAAGAACTTGAACAGGCAACAGATAACTACAACGACAGTAGATTTCTGGGTCAAGGAGGGTATGGCACAGTTTACAAAGGGATTCTCCATGACAACACTGTTGTTGCAATCAAAAGGTCAAAGCAAATCGACACAAGCTGGATTGAACAGTTCATTAATGAAGTTATTATCCTATCTCAAATTAATCACCGAAACATTGTTAAGCTTCTAGGTTGTTGTTTAGAAACTGAGTTTCCTTTGCTGGTTTATGAATTTGTTTATAACGGGACGCTTTCGCACCATATTCACAAGGAAAATTATGAAGAATCACCTCCTCTTTCATGGGAAACTCGTCTTCGAATCGCTTCTGAAGTTTCCGGAGCTATGTCTTACATGCATTCTGCCGCTTCAATTCCTATCTATCACAGAGATATCAAATCTTTAAACATACTTTTGGATGAAAACTATAGTGCTAAAGTTTCTGATTTTGGAACATCCAGATTTGTGTCATGTGATCAATCACATTTAACTACAAAAGTGTTGGGAACTTTTGGATATATAGATCCAGAGTATTTCCGATCAAGTCAATACACTGAAAAGAGTGACGTATATAGTTTTGGAGTCTTGATGGTGGAACTTTTAACGGGGAAGCTACCAGTTACTTTTGCAAGAGATGATGGTAGAAATTTGTTAGACTATTTCATTTCACTGGAAAAGGCTAATCAGCTTGTTGAAATTTTAGATATTATAGTAGCCGCAGAAGAAAGCATGGACGTTGTTAACAGTGTTGCTACACTTGCCACAAAATGTTTAAGATCAAATGGGAAGGAAAGACCAACGATGAAACAAGTATATTTGGAACTAGAAGGATTAAGAAAGTCTCGAGATTGTCCAGATATTAGTGAGGACGTTCAATCAATTGGAACGTCTTCATCATTCTCTCTAGAGGTTGGGGATGACGACCTTACGGATGATAGCATCATCGTATCCATTGAAACTATGACACCCATCACTATATAG 1632 38.66 MLYTIKSGDSYEKIAHDVFQGLTSCSALKNKNHDYPLVNTAAIGRRLEVPIRCACPTKAQIASRVHSLIVYTLQLNETIGSVARAFGVEEKSVLEANMLSNWSHIYPFTPILVPLGKDDTCRIYPYSLDCRDMSSSFSDIFSYIFLNLVLIPIAGLIGLACCFCCGCKGNQLLLKKRRRKLYKKKFFKQNGGHLLQQKLLEDSERVKIYTQEELEQATDNYNDSRFLGQGGYGTVYKGILHDNTVVAIKRSKQIDTSWIEQFINEVIILSQINHRNIVKLLGCCLETEFPLLVYEFVYNGTLSHHIHKENYEESPPLSWETRLRIASEVSGAMSYMHSAASIPIYHRDIKSLNILLDENYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFARDDGRNLLDYFISLEKANQLVEILDIIVAAEESMDVVNSVATLATKCLRSNGKERPTMKQVYLELEGLRKSRDCPDISEDVQSIGTSSSFSLEVGDDDLTDDSIIVSIETMTPITI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13719493 13721458 - MC06g_new0304 Mch6g1470 690917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1470 543 ProSitePatterns Protein kinases ATP-binding region signature. 227 249 IPR017441 GO:0005524(InterPro)
Mch6g1470 543 CDD STKc_IRAK 227 495 - -
Mch6g1470 543 FunFam Wall-associated receptor kinase 2 194 296 - -
Mch6g1470 543 FunFam Wall-associated receptor kinase 2 297 514 - -
Mch6g1470 543 SMART serkin_6 221 495 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1470 543 ProSiteProfiles Protein kinase domain profile. 221 495 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1470 543 Gene3D LysM domain 57 120 IPR036779 -
Mch6g1470 543 SMART LysM_2 70 114 IPR018392 -
Mch6g1470 543 SMART LysM_2 2 50 IPR018392 -
Mch6g1470 543 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 85 497 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Mch6g1470 543 Pfam Protein kinase domain 221 488 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1470 543 Pfam LysM domain 71 114 IPR018392 -
Mch6g1470 543 Pfam LysM domain 3 34 IPR018392 -
Mch6g1470 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g1470 543 SUPERFAMILY Protein kinase-like (PK-like) 204 497 IPR011009 -
Mch6g1470 543 ProSiteProfiles LysM domain profile. 69 113 IPR018392 -
Mch6g1470 543 Gene3D Transferase(Phosphotransferase) domain 1 297 513 - -
Mch6g1470 543 Gene3D Phosphorylase Kinase; domain 1 195 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1470 Mch-Chr6:13719493 Mch6g1473 Mch-Chr6:13823753 2.45E-260 dispersed
Mch6g1483 Mch-Chr6:14185906 Mch6g1470 Mch-Chr6:13719493 1.30E-46 dispersed
Mch6g1484 Mch-Chr6:14188210 Mch6g1470 Mch-Chr6:13719493 2.68E-47 dispersed
Mch6g1470 Mch-Chr6:13719493 Mch6g1471 Mch-Chr6:13767983 3.50E-295 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77495 PF00069 Pkinase 1.30E-51 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1470 - - - 0.0