Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1471 ATGGCAGCCCTTCCTGTTTTCCTCTTTCTTTCTCTCTTTCTACGTCAATCCCTCTGCCAACAGTCGTATGTGGGAAACGAGACCAATTGCTCTAACAATACCACTTCAACACCAAAAGGGTACGTTTGCATTGATTCAATATACTCATGTTCTTCCTCTTATTTGACCTTCAGATCCAAGCCGCCCTACGATACACAATCCACGATAAGCGATCTCTTCGCAGGTTATGTCTACAAAACAACATTAAACAACGGTAGTTTGTTTGCTACTAGTATTTCATGCTCATGTGTGCGACGTTCCTATCGGACCATCTCCTACTACACAATTAAGCGCGGTGATAGTTATGAGAAAATAGCATACGATATCTACCAAGGTTTAGTGAGCTGCTCTGCACTGAAAAGCCAAAATCAGCAGGACTATGCTGTTGATAATACTTCTTCAATTGACATGATACTCCAAGTTCCGTTGCGATGTGCTTGCCCTACCAAAGCTCAAGAAGCTAACGGGGTCAAGGCCTTGTATGTGTATATGCTACAACCAGATGAGAGCATTGGATCTGTTGCAAGGGATTTTGGGGTTGAGGAACACAGCGTCTTGGAAGCAAACAAGCTTTCGAATACAAGTCGAATCTACCCATTTACGCCTATTTTAGTTCCATTGAACCAAACTGATATTTGCAGAATACACCCTGACTCATACAACCCCTACTGTAGAAACAGTCCTTCTAGTGATTTGGCCCAGCAGCTTTCGTCTATTTTCATATACTACGTCTCTATTCCAATAGGTGGTCTAATGATATTATCATGTTGTTTCTTCTGCGGATGCAAGGGAAATCAACTATTCTTGAAGAAAAGAAGACTCAAACTTTATAAGAAAAAGTTTTTCAAGCAAAATGGTGGCGTCTTAATGCAACAAAAACTACTTGAAGATAGTGAGAGAGTAAAAATATTTACACAGGAAGAACTTGAACAAGCAACAGATAACTACAACGAAAGTAGATTTCTTGGTCAAGGAGGGTATGGCACAGTTTACAAAGGAATGCTCCATGATAACACTGTTGTTGCAATCAAAAGGTCAAAGCAAATTGACACAAACTGGATCGAACAGTTCATTAATGAAGTTATTATCCTATCTCAAATTAATCACAGAAATATCGTTAGGCTTCTTGGTTGCTGTTTAGAAACCGAGTATCCTTTATTAGTTTATGAATTTGTTTCTAATGGGACGCTTTCACACCATATTCACAAGGAAAATCTTGAAGAATCACCTTCTCTTTCGTGGGAAACTCGTCTCAAAATCGCTTATGAAGTTGCGGGAGCTATATCTTACATGCATTCTGCAGCTTCAATTCCTATCTATCATAGAGATATCAAATCCTTAAACATACTTTTGGATGATAACTACAGTGTAAAAGTTTCTGATTTTGGAACATCAAGATTTGTGTCATGTGATCAATCACATTTGACTACAAAAGTATTGGGAACTTTTGGATATATAGATCCAGAATATTTCAGATCAAGTCAATACACTGAAAAGAGTGACGTATATAGTTTTGGAGTCTTGATGGTGGAACTTTTAACTGGGAAGATACCTGTTACTTTTGCAAGAGATGATGGTAGAAATTTGTTAGACTATTTCATTTCACTGGAAAAGGCTAATCAGCTTGTTGAAATTTTAGATATTATAGTAGCCGCACAAGAAAGTATGGACGTTGTTAACAGTGTTGCTACACTTGCCACAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCAACAATGAAACAAGTATATTTGGAACTAGAAGGATTAAGAAAGTCTCAAGATTGTCAAGAAACAAGTGAAGAAGTTCAATCAATTGGAACTTCTTCATCATTCTCTCTAGAGGTTGGAGATGAAGACCTTACGGATGAAGAGAGATGA 1920 37.92 MAALPVFLFLSLFLRQSLCQQSYVGNETNCSNNTTSTPKGYVCIDSIYSCSSSYLTFRSKPPYDTQSTISDLFAGYVYKTTLNNGSLFATSISCSCVRRSYRTISYYTIKRGDSYEKIAYDIYQGLVSCSALKSQNQQDYAVDNTSSIDMILQVPLRCACPTKAQEANGVKALYVYMLQPDESIGSVARDFGVEEHSVLEANKLSNTSRIYPFTPILVPLNQTDICRIHPDSYNPYCRNSPSSDLAQQLSSIFIYYVSIPIGGLMILSCCFFCGCKGNQLFLKKRRLKLYKKKFFKQNGGVLMQQKLLEDSERVKIFTQEELEQATDNYNESRFLGQGGYGTVYKGMLHDNTVVAIKRSKQIDTNWIEQFINEVIILSQINHRNIVRLLGCCLETEYPLLVYEFVSNGTLSHHIHKENLEESPSLSWETRLKIAYEVAGAISYMHSAASIPIYHRDIKSLNILLDDNYSVKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKIPVTFARDDGRNLLDYFISLEKANQLVEILDIIVAAQESMDVVNSVATLATKCLRSNGKERPTMKQVYLELEGLRKSQDCQETSEEVQSIGTSSSFSLEVGDEDLTDEER 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13767983 13769989 - MC06g_new0305 Mch6g1471 690918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1471 639 ProSiteProfiles Protein kinase domain profile. 329 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1471 639 FunFam Wall-associated receptor kinase 2 302 404 - -
Mch6g1471 639 ProSiteProfiles LysM domain profile. 174 218 IPR018392 -
Mch6g1471 639 SMART serkin_6 329 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1471 639 Gene3D Transferase(Phosphotransferase) domain 1 405 626 - -
Mch6g1471 639 Gene3D LysM domain 159 225 IPR036779 -
Mch6g1471 639 MobiDBLite consensus disorder prediction 612 629 - -
Mch6g1471 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 103 607 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Mch6g1471 639 Coils Coil 308 328 - -
Mch6g1471 639 MobiDBLite consensus disorder prediction 609 639 - -
Mch6g1471 639 Pfam Protein kinase domain 329 596 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1471 639 CDD STKc_IRAK 335 603 - -
Mch6g1471 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g1471 639 Pfam LysM domain 176 219 IPR018392 -
Mch6g1471 639 Pfam LysM domain 107 139 IPR018392 -
Mch6g1471 639 SUPERFAMILY Protein kinase-like (PK-like) 312 600 IPR011009 -
Mch6g1471 639 CDD LysM 175 212 IPR018392 -
Mch6g1471 639 Gene3D Phosphorylase Kinase; domain 1 301 404 - -
Mch6g1471 639 SMART LysM_2 175 219 IPR018392 -
Mch6g1471 639 SMART LysM_2 106 155 IPR018392 -
Mch6g1471 639 FunFam Wall-associated receptor kinase 2 405 622 - -
Mch6g1471 639 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1814 Mch-Chr4:21045706 Mch6g1471 Mch-Chr6:13767983 2.92E-113 dispersed
Mch6g1471 Mch-Chr6:13767983 Mch6g1474 Mch-Chr6:13886124 2.53E-282 dispersed
Mch8g0742 Mch-Chr8:5250409 Mch6g1471 Mch-Chr6:13767983 1.79E-53 dispersed
Mch6g1470 Mch-Chr6:13719493 Mch6g1471 Mch-Chr6:13767983 3.50E-295 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77496 PF00069 Pkinase 1.90E-53 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1471 - - - 0.0