Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1474 ATGAAGGTTTGGTTTGTTTCTGTCATCTTCTTCCTTTCCTTCTTTCCCCACCAATCCCTTTGCCAACAAACATATTTGGGAAATGAGAGCTGCTCTCTCAATAATACTTCAAAGCCAAAAGAGTTCCTCTGCACTGATTCTGTTTACTCATGTTCTTCATATTTAATCTTCAGATCGTCCACCCCCTATCGTGGCTCTCGTTATCTCTTCTATGATGCCTACAATATTAGATTAGGGAACAAAAGTTTGTTTGTTAATTACGTTGATTGTGAATGTTCAGGTTCTTTCTCTCAGTACTTCATCAACTACACCATCGAGAGCGGTGATAGTTATGAAAAAATAGCGAATGATATTTTTCAAGGCCTAACAAGCTGCTCGTCGTTGAGAAGTCGAAACGACAACTACGTTATCGATAATACTTCTTCGATAGGGAGAGTAGTCCAAGTTCCTTTGCGATGTGCTTGTCCTACCAAAGCTCAGAAGGCTAATGGAGTCGAGTCCTTGGCTGTGTATGCGGTACATCCCAATGAAACAATTGCATCCGTTGCGAGGGATTTTCGGGTCGAGGAAGAAAGCGTCTTCGAAGCAAACAAGCTTTCGAATTCAAGCCACATCTATCCCTTCACGCCTCTTTTGGTACCGTTGGGCAAAAATGATATAAGTAGAATATCTTACCCCGACAGCTACAACATCATTGCTCCAAATTTCATCCCATATGTTATAATCTTGATTACCATAGGTGGTGTAATAATATTAATAAGTTCTTTCTTCTGCGGATGCAAAGGACATCAACTGCTACTCACAAAACGAAGACGGGAACTCCATAAGAAAAAGTTTTTCAAGCAAAATGGTGGGATCTTATTGCAGCAAAAAGTACTGAAAGAAAGCGAGAGAGTAAAAATATTTACACAAGAAGAGCTTGAACAAGCAACGGATAACTACAGCGAAAGTAGATTTCTTGGTCAAGGAGGGTATGGCACAGTTTATAAAGGAATGCTCCAGGACGACACTATTGTTGCAATCAAAAGGTCGAAGCAAGTTGAGGCAAACTGCATCGATCAATTCATTAATGAAGTTATTATCCTTTCTCAAATAAACCACAAAAACATTGTCAGGCTTCTGGGTTGTTGTTTGGAAACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCGAATGGAACCCTTTTCCCCCACATCCACAAGAAAGACCCTGGGGAATCACCTTCTCTTTCGTGGGAAACTCGTCTCATAATCGCTTTGGAAGTTGCAGGAGCTATATCTTACATGCATTCTACAGCCTCAACTCCAATTTTTCACAGAGATATCAAGTCTTCAAACGTACTTTTGGATGATAACTACAGTGCAAAAGTTTCTGATTTTGGAACATCAAGATTTGTGTCATGTGATCAATCTCATTTGACAACAAAAGTGCAGGGAACTTTTGGATATATAGATCCTGAGTACTTCAGATCTTGTCAATACACTGAAAAGAGTGATGTTTATAGTTTTGGAATCTTAATGGTAGAGCTTTTAACCGGAAAGCTACCTGTCACATTTGCAAGAAATGAGGACAAGAATCTATTAGACTACTTCATTTCATTGGAAAAGGCTAATGAGCTTGCTGAAATTCTAGATATTGTAGTTGCCAAGGAAGAAAAGATGGAGGTTGTTAACGTTGTCGCAAATCTTACTGCTAAATGTTTAAGATCAAAAGGGAAAGATCGGCCTACCATGAAGCAGATATATTTGGAACTAGAAGGATTGAGGAAGTCTCAAAATTGTTTAGACACTATTGAAGAAAGTCATTCAATTACAACTTACTCATTGCACTCTTTAGGGTTAAGTGATGACGAGCTTCCAAGATGA 1866 38.85 MKVWFVSVIFFLSFFPHQSLCQQTYLGNESCSLNNTSKPKEFLCTDSVYSCSSYLIFRSSTPYRGSRYLFYDAYNIRLGNKSLFVNYVDCECSGSFSQYFINYTIESGDSYEKIANDIFQGLTSCSSLRSRNDNYVIDNTSSIGRVVQVPLRCACPTKAQKANGVESLAVYAVHPNETIASVARDFRVEEESVFEANKLSNSSHIYPFTPLLVPLGKNDISRISYPDSYNIIAPNFIPYVIILITIGGVIILISSFFCGCKGHQLLLTKRRRELHKKKFFKQNGGILLQQKVLKESERVKIFTQEELEQATDNYSESRFLGQGGYGTVYKGMLQDDTIVAIKRSKQVEANCIDQFINEVIILSQINHKNIVRLLGCCLETEFPLLVYEFVSNGTLFPHIHKKDPGESPSLSWETRLIIALEVAGAISYMHSTASTPIFHRDIKSSNVLLDDNYSAKVSDFGTSRFVSCDQSHLTTKVQGTFGYIDPEYFRSCQYTEKSDVYSFGILMVELLTGKLPVTFARNEDKNLLDYFISLEKANELAEILDIVVAKEEKMEVVNVVANLTAKCLRSKGKDRPTMKQIYLELEGLRKSQNCLDTIEESHSITTYSLHSLGLSDDELPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13886124 13888238 - MC06g_new0307 Mch6g1474 690921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1474 621 CDD STKc_IRAK 320 588 - -
Mch6g1474 621 Pfam Protein kinase domain 314 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1474 621 FunFam Wall-associated receptor kinase 2 287 389 - -
Mch6g1474 621 Gene3D LysM domain 154 221 IPR036779 -
Mch6g1474 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g1474 621 ProSiteProfiles Protein kinase domain profile. 314 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1474 621 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 118 592 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Mch6g1474 621 Pfam LysM domain 171 214 IPR018392 -
Mch6g1474 621 Pfam LysM domain 103 150 IPR018392 -
Mch6g1474 621 Gene3D Phosphorylase Kinase; domain 1 287 389 - -
Mch6g1474 621 SUPERFAMILY Protein kinase-like (PK-like) 298 585 IPR011009 -
Mch6g1474 621 CDD LysM 170 213 IPR018392 -
Mch6g1474 621 Gene3D Transferase(Phosphotransferase) domain 1 390 608 - -
Mch6g1474 621 SMART serkin_6 314 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1474 621 FunFam Wall-associated receptor kinase 2 390 607 - -
Mch6g1474 621 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Mch6g1474 621 Coils Coil 293 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1471 Mch-Chr6:13767983 Mch6g1474 Mch-Chr6:13886124 2.53E-282 dispersed
Mch6g1474 Mch-Chr6:13886124 Mch6g1488 Mch-Chr6:14274369 8.04E-182 dispersed
Mch6g1473 Mch-Chr6:13823753 Mch6g1474 Mch-Chr6:13886124 2.45E-243 tandem
Mch6g1474 Mch-Chr6:13886124 Mch6g1475 Mch-Chr6:13907016 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77498 PF00069 Pkinase 1.40E-51 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1474 - - - 0.0