Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g1476 | GAAGATACCAAGAGAGTCAAAATTTTTACACAAGAAGAGCTTGAGCAGGCAACGGATAAATATAGTGAAAGTAGATTTCTTGGTCAAGGAGGGTATGGCACAGTTTATAAAGGAATGCTTCATGACAACAATATTGTTGCAATTAAAAGGTCCAAGCAAATTGAGGCAAGCTGGATCGATCAATTCATTAATGAAGTTATTATCCTTTCTCAAATAAACCACAGAAATATTGTCAGGCTTCTGGGTTGTTGTTTAGAAACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCAAATGGAACGCTTTCACACCACATTCACAAGAAAGATCCTGGAGAATCACCTTCTCTTTCGTGGGAAACTCGTCTTAGAATCGCTTCAGAAGTTGCAGGAGCCATATCTTACATGCATTCTACAGCTTCAACTCAAATTTTTCACAGAGATATCAAGTCTTCAAACGTACTTTTGGATGATAAATATAGTGCAAAAGTTTCTGATTTTGGAACGTCAAGATTTGTGTCAAGTGATCAATCTCATCTGACAACGAAAGTGCAAGGAACATTTGGATATATCGATCCAGAGTACTTCAGATCAAGTCAATACACTGAAAAGAGTGACGTCTATAGCTTTGGAGTCTTAATGGTAGAGCTTTTAACTGGTAAGCTACCTGTGACATTTGCGAAGAATGAGGACAAAACTCTATTAGACTACTTCGTTTCATTGGAAAAGTCTAATGAGCTTGCTGAAATTCTAGATATTGTAGTAGCGAATGAAGAAAAGATGGAGGCTGTTAGCGCTGTAGCAAAACTTACTACTAAATGTTTAAGATCAAAGGGGAAAGATAGGCCTACCATGAGGCAAGTATATTTGGAACTA | 876 | 36.99 | EDTKRVKIFTQEELEQATDKYSESRFLGQGGYGTVYKGMLHDNNIVAIKRSKQIEASWIDQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHHIHKKDPGESPSLSWETRLRIASEVAGAISYMHSTASTQIFHRDIKSSNVLLDDKYSAKVSDFGTSRFVSSDQSHLTTKVQGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFAKNEDKTLLDYFVSLEKSNELAEILDIVVANEEKMEAVSAVAKLTTKCLRSKGKDRPTMRQVYLEL | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 13944292 | 13945167 | - | MC06g1168 | Mch6g1476 | 690923 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g1476 | 292 | Pfam | Protein kinase domain | 21 | 288 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch6g1476 | 292 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch6g1476 | 292 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 96 | - | - | |
| Mch6g1476 | 292 | ProSiteProfiles | Protein kinase domain profile. | 21 | 292 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch6g1476 | 292 | FunFam | Wall-associated receptor kinase 2 | 97 | 292 | - | - | |
| Mch6g1476 | 292 | SMART | serkin_6 | 21 | 290 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch6g1476 | 292 | Gene3D | Transferase(Phosphotransferase) domain 1 | 97 | 292 | - | - | |
| Mch6g1476 | 292 | FunFam | Wall-associated receptor kinase 2 | 1 | 96 | - | - | |
| Mch6g1476 | 292 | ProSitePatterns | Protein kinases ATP-binding region signature. | 27 | 49 | IPR017441 | GO:0005524(InterPro) | |
| Mch6g1476 | 292 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 4 | 292 | IPR045274 | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro) | |
| Mch6g1476 | 292 | CDD | STKc_IRAK | 27 | 292 | - | - | |
| Mch6g1476 | 292 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 290 | IPR011009 | - | |
| Mch6g1476 | 292 | PIRSF | ILK | 2 | 292 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g1476 | Mch-Chr6:13944292 | Mch6g1488 | Mch-Chr6:14274369 | 2.60E-144 | dispersed | |
| Mch6g1475 | Mch-Chr6:13907016 | Mch6g1476 | Mch-Chr6:13944292 | 2.53E-179 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77500 | PF00069 | Pkinase | 2.10E-54 | CL0016 | Mch | PK |
Pathway information