Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1488 TTCTTCTTCATGCTTTGGCTCTTTTTTGAACCATCATTCTCCCAACAACATTATCTCAACAATGGCCAACTTAACTGCTCAGATAGCAGCCCCATATCAAGAGGCTACGTCTGTAACAGCCGCGTGAGCTCCTGCGAGTCCTTGGTCATCTTCCGGTCCCGGCCCAACCTCGACACTTCAGCTGCCATCGCCACCCTCCTCAGCTCCAAGGCCGATGACGTAGCCTGGCTCAACAACTTCCCCTCCACAGACCACCTTATCCCCCACGGTACCCTCGTTGAAGTCCCGATCTCGTGCTCGTGCGGTGGAAGCATATTCCAGCACAATAGCCGATACACCGTCAGAGCTTCCGATACGATCGCGAACGAAACGTACCAAGGGTTGACGACTTGTCAAGCAATGACGGGACAGAACTATTACGAGGGCGTGATCCCAGAGGGGACAGAGGTGATGGTGCCGGTGAGATGCGCGTGCCCAACGGGGAACCAGACGAGGAACGGCGTGACTGCGTTGAGTGTTTATATGGTGGAGGTGGGAGATACCATAGACTCCATTGCCAACACTTTTGGAGCTGAAATACAGAGCTTGTTTGAAGCAAACCAGCTGCTGAAGAGTAGCAAAATATACCCTTTTACGCCTCTTTTGATTCCATTGGATCATGAGTGCTGCCAAGTGAATTCTCGCTACTTCTTCTGCTCAAAATCTTGTGATTCCAATCACCTCTCCAGCTGCGGATCACCAGCCAAACTGTCAGTAACTCTAATAGGTGTTGGAAGTGGGATGGCATTGTTGGTTTTAGTTCTTGTGGGGTGCAAAGTACATCAATGGATGAAGAGAAGACAAGACAAGGTTTACAGAGGGAAGTTTTTCAGGAAAAACGGGGGCCTCTTGTTGTTGCAAAAGCTTAACGAAACTGGCCAGAAAGCAAAAATATTCACCGTGGAGGAATTGGAGAGGGCGACGGATAATTATAATCAAAGTCGATTTCTTGGTGAAGGAGGGTATGGCACAGTTTATAAAGGGATGCTCCAAGATGGTATGATAGTTGCGGTGAAGAGGTCTAAAATAATAGAGGGAAAATATATGGAGCAATTCGTTAACGAAGTTATTATCCTCTCTCAAATTAATCACAGGAATATTGTTAAGCTTCTTGGTTGTTGCTTAGAAACCGAGTTTCCTTTGCTGGTGTATGAATTTGTTCCGAATGGCACGCTCTCCCACCACATCCACAAAGAAAGCTTGGAGGACTCATCATGTCTTTCTTGGGAAATACGTTTAAAGATTGCTTGTGAAGTTGCGGGAGCTATAACTTACATGCACTCAACCACTTCAATCCCTATTTTTCATCGCGACATCAAGTCCTCTAACATACTTTTAGATGATAATTATAGTGCAAAAGTTTCAGATTTTGGAACATCAAGATTCGTGCCTTGCAATCAATCCCATTTAACTACAAGTGTTCAAGGAACTTTTGGCTACATGGATCCGGAGTATTTCAGGTCAAGTAAGTTCACCGATAAAAGTGATGTCTACAGCTTCGGAGTGCTGATTGTGGAGCTTTTAACGGGAAAGCAACCATTTTCCTTTGCTAGAGACGAGGGAAAGAATTTACTTGAGCACTTCATTTCAATGGATAAGGAAAATCAAGTGACTAACCTTCTTGATGATGAATTAGATAGAGAAGAAAATATGGATGTTATTCTTTCTGTAGCAAAGATTGCTACCAAATGTTTGAGATTGAATGGAAAGAAGAGGCCTACAATGAAACAAGTGCTTTTGGAATTA 1785 44.48 FFFMLWLFFEPSFSQQHYLNNGQLNCSDSSPISRGYVCNSRVSSCESLVIFRSRPNLDTSAAIATLLSSKADDVAWLNNFPSTDHLIPHGTLVEVPISCSCGGSIFQHNSRYTVRASDTIANETYQGLTTCQAMTGQNYYEGVIPEGTEVMVPVRCACPTGNQTRNGVTALSVYMVEVGDTIDSIANTFGAEIQSLFEANQLLKSSKIYPFTPLLIPLDHECCQVNSRYFFCSKSCDSNHLSSCGSPAKLSVTLIGVGSGMALLVLVLVGCKVHQWMKRRQDKVYRGKFFRKNGGLLLLQKLNETGQKAKIFTVEELERATDNYNQSRFLGEGGYGTVYKGMLQDGMIVAVKRSKIIEGKYMEQFVNEVIILSQINHRNIVKLLGCCLETEFPLLVYEFVPNGTLSHHIHKESLEDSSCLSWEIRLKIACEVAGAITYMHSTTSIPIFHRDIKSSNILLDDNYSAKVSDFGTSRFVPCNQSHLTTSVQGTFGYMDPEYFRSSKFTDKSDVYSFGVLIVELLTGKQPFSFARDEGKNLLEHFISMDKENQVTNLLDDELDREENMDVILSVAKIATKCLRLNGKKRPTMKQVLLEL 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14274369 14276827 + MC06g1169 Mch6g1488 690935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1488 595 SMART serkin_6 324 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1488 595 SUPERFAMILY LysM domain 173 217 IPR036779 -
Mch6g1488 595 FunFam Wall-associated receptor kinase 2 400 595 - -
Mch6g1488 595 Gene3D Phosphorylase Kinase; domain 1 299 399 - -
Mch6g1488 595 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524(InterPro)
Mch6g1488 595 Pfam Protein kinase domain 324 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1488 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g1488 595 SMART LysM_2 173 217 IPR018392 -
Mch6g1488 595 ProSiteProfiles Protein kinase domain profile. 324 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1488 595 CDD LysM 173 216 IPR018392 -
Mch6g1488 595 Pfam LysM domain 174 217 IPR018392 -
Mch6g1488 595 SUPERFAMILY Protein kinase-like (PK-like) 304 592 IPR011009 -
Mch6g1488 595 FunFam Wall-associated receptor kinase 2 297 399 - -
Mch6g1488 595 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 133 595 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Mch6g1488 595 ProSiteProfiles LysM domain profile. 172 216 IPR018392 -
Mch6g1488 595 Gene3D Transferase(Phosphotransferase) domain 1 400 595 - -
Mch6g1488 595 CDD STKc_IRAK 330 595 - -
Mch6g1488 595 Gene3D LysM domain 169 226 IPR036779 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2584 Mch-Chr4:26239866 Mch6g1488 Mch-Chr6:14274369 6.72E-50 dispersed
Mch5g0899 Mch-Chr5:6622573 Mch6g1488 Mch-Chr6:14274369 2.57E-173 dispersed
Mch6g1474 Mch-Chr6:13886124 Mch6g1488 Mch-Chr6:14274369 8.04E-182 dispersed
Mch6g1475 Mch-Chr6:13907016 Mch6g1488 Mch-Chr6:14274369 8.04E-182 dispersed
Mch6g1476 Mch-Chr6:13944292 Mch6g1488 Mch-Chr6:14274369 2.60E-144 dispersed
Mch6g1488 Mch-Chr6:14274369 Mch8g1280 Mch-Chr8:9295705 1.50E-71 dispersed
Mch6g1483 Mch-Chr6:14185906 Mch6g1488 Mch-Chr6:14274369 8.18E-22 proximal
Mch6g1484 Mch-Chr6:14188210 Mch6g1488 Mch-Chr6:14274369 1.04E-36 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77501 PF00069 Pkinase 7.20E-53 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1488 - - - 0.0