Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1568 ATGGCGGGGATCCCCTCTGAGGGGTTGGGGGATGATTTCTTCGAGCAGATTCTGGCGGTGCCGCCGGCTTACGGCGGCGATGTGGTGGCCATGACCATGCCGATGGGGCTGCAACTCGGGTCCGGCGGCGGAGGGATGGCGATGCCGTTGGGGCTGAATTTGGAGCAAGGCTTTTTGAGGCAGGAGAGGTTCAGAGAAGAGCTTGATGCCCAAAATAATAATAATAATGCTTCTTCTTCCTCCACTGCCTCTTCAGGAATCACTGAGAGAGATTCTTCGGTGCACCACATGACAAGCCTGTTTCCGACCTTTGGACACTTGCAGACTCAAGCTCTCCGGCCACCGCCGCCGCCGCTACATCTCCACCAGCCCTTCCACAACCAGATGACTCCCGGGACCGTTGTTGCTGTACCGCAACCGCCTCAAGTCCGTCCAAGAGTTCGAGCAAGACGAGGGCAAGCGACTGATCCTCACAGTATTGCAGAAAGGTTGCGTCGGGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAAGAGTTGGTTCCTAGCTGCAATAAGACTGATAGAGCGGCAATGCTGGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGCGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGACGTACCCCTATCATCAGTTGAGGGAGAGGGCATTGAGAGTGCCAGCAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGGACAGAGCAACAAGTAGCAAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTTCAGTCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCTGCAATTTTCAGGACACACCAAGGGGATCCACCCATGATAGTGAAGCCTGAAATGAACACTCCTTAG 927 52.64 MAGIPSEGLGDDFFEQILAVPPAYGGDVVAMTMPMGLQLGSGGGGMAMPLGLNLEQGFLRQERFREELDAQNNNNNASSSSTASSGITERDSSVHHMTSLFPTFGHLQTQALRPPPPPLHLHQPFHNQMTPGTVVAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESASNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQGDPPMIVKPEMNTP 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16420103 16426539 - MC06g1214 Mch6g1568 691015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1568 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983(InterPro)
Mch6g1568 308 FunFam Basic helix-loop-helix transcription factor 148 210 - -
Mch6g1568 308 MobiDBLite consensus disorder prediction 68 91 - -
Mch6g1568 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 212 IPR036638 GO:0046983(InterPro)
Mch6g1568 308 Gene3D - 146 203 IPR036638 GO:0046983(InterPro)
Mch6g1568 308 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 287 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch6g1568 308 MobiDBLite consensus disorder prediction 70 91 - -
Mch6g1568 308 Pfam Helix-loop-helix DNA-binding domain 158 203 IPR011598 GO:0046983(InterPro)
Mch6g1568 308 SMART finulus 159 208 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1568 Mch-Chr6:16420103 Mch9g0913 Mch-Chr9:7244657 3.20E-87 dispersed
Mch6g1568 Mch-Chr6:16420103 Mch6g0634 Mch-Chr6:4333488 1.26E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43582 PF00010 HLH 6.70E-08 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1568 - - - 0.0