Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1586 ATGGAGAAAGACGAATCCATCGATGGGTTTTCAAATCTTCATCACCCAGATTCCTCTCGCTATGTTGAAATTGATCCGTCTGGCAGATATGGAAGATACAATGAAATCCTTGGCAAAGGGGCTTCCAAGACAGTGTATGAAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTACTCCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTTTTAAAAACACTGAAACATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCAAATAGGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGTCTTTGAGGCAGTTTCGGCTAAAGCATCGTAGAGTTAACAATAGAGCGGTGAAGCGATGGTGTAGACAGATCTTGAGGGCTCTTCTCTATCTCCATAGCCAGGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAATATTTTTGTTAATGGTAACCAAGGAGAAATTAAGATTGGTGATCTTGGTCTTGCTGCGATTCTCAGGAAATCACATGCTGATCGCTGCGTCGGGACACCAGAGTTCATGGCTCCTGAAGTGTATGAAGAGGCATACAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACATTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAACTTCTGGGGAAAAACCAGCTGCCTTGTATAAAGTGAAGGATCCAAGCATGCGGCAATTCGTCGAGAAATGCTTAGCACCAGTTCCATATAGACTTTCGGCGAGGGAGCTTTTGAGTGATCCTTTTCTACAAATTGATGATTGTGAAAGCAAGTCGAAAATTTCAGATTGTCAGGGAGAACTTGACCGTATTGCTTCTACTATAGTGCAGCCTTTTCTTGAACGAGAAATAAGTTTCAGCTCAATCAATTACAGTTTGGACACCTCAGATGAATGGAGGTGCCGTATCGTTGAAACTGAACCAGACGGGACTGAACTTTTTGAGGATGATGATGATGACCAATTGGAAAATGTTGATAACAGTATTACGGGGAAGATAAGAGAAGATGGCAGTATTGTTTTAAGACTTAGGATTGCAGATAAAGAAGGACGAATTCGAAACATATATTTCCCATTTGACACCAAGATGGATACAGCATTAACAGTTGCCACTGAAATGATAGCAGAGCTTGATATTACTGACCAAGATGTGACCAAGATAGCCGAAAAAATCGATGGGGAAATCGCTTCCTTGGTACCCGAGTGGAAACCAGGGCCTGGCATAGATGAAACACCCCGCATCTCTTACGACGGTGACCTTCAAAGCTACGACACTTCTAACCATCCATCTTATAATCATTTGATAGAGAAGATGCAAAATGGAGCAAAAAACTCTCAGATTTTAAACTGCAGTGCAGACGAACGTGCTTCAGCGCCCAGACATTTCGAGCAAGTTTCCCACAAAGAAGATCAGCCTACACAGCCTGTGGTAGAGAGAATACCAAAAGTGTCAAACCAGCATTATCAGCTAAACTCTGTCCTCCATGAAGGCCAAGCTCTTAGTTCTCATAGTTTTAGGCAAAGCCATTCTGATCAAAATAACAAGAAAACAGGCCAATTAATCACTGGTGGGAATGACATAGAAAAAATACAAGTTAGTAAAGCCACTGCCATTGCAAAAAGTTCGATCCGAAGCTTACTGGGTTCTCGTTCGTTGTCGAGAGTTCCTTCTTATCGTGAAGATAAATTTGCTTCTCAAATCCATTGGGAAATAAGGTGGCTATGGAATTGA 1845 41.14 MEKDESIDGFSNLHHPDSSRYVEIDPSGRYGRYNEILGKGASKTVYEAFDEYEGIEVAWNQVKLCNLLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGSLRQFRLKHRRVNNRAVKRWCRQILRALLYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADRCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVTSGEKPAALYKVKDPSMRQFVEKCLAPVPYRLSARELLSDPFLQIDDCESKSKISDCQGELDRIASTIVQPFLEREISFSSINYSLDTSDEWRCRIVETEPDGTELFEDDDDDQLENVDNSITGKIREDGSIVLRLRIADKEGRIRNIYFPFDTKMDTALTVATEMIAELDITDQDVTKIAEKIDGEIASLVPEWKPGPGIDETPRISYDGDLQSYDTSNHPSYNHLIEKMQNGAKNSQILNCSADERASAPRHFEQVSHKEDQPTQPVVERIPKVSNQHYQLNSVLHEGQALSSHSFRQSHSDQNNKKTGQLITGGNDIEKIQVSKATAIAKSSIRSLLGSRSLSRVPSYREDKFASQIHWEIRWLWN 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16831404 16834560 + MC06g1222 Mch6g1586 691033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1586 614 Pfam Protein kinase domain 34 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1586 614 SMART serkin_6 31 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1586 614 Gene3D Phosphorylase Kinase; domain 1 16 112 - -
Mch6g1586 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 18 552 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Mch6g1586 614 SUPERFAMILY Protein kinase-like (PK-like) 34 289 IPR011009 -
Mch6g1586 614 ProSiteProfiles Protein kinase domain profile. 31 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1586 614 Gene3D Transferase(Phosphotransferase) domain 1 114 294 - -
Mch6g1586 614 MobiDBLite consensus disorder prediction 538 560 - -
Mch6g1586 614 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Mch6g1586 614 CDD STKc_WNK 29 288 - -
Mch6g1586 614 FunFam Probable serine/threonine-protein kinase WNK1 16 112 - -
Mch6g1586 614 Gene3D - 375 441 - -
Mch6g1586 614 FunFam probable serine/threonine-protein kinase WNK9 114 293 - -
Mch6g1586 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1586 Mch-Chr6:16831404 Mch7g1064 Mch-Chr7:14680084 4.26E-214 dispersed
Mch6g1586 Mch-Chr6:16831404 Mch8g2922 Mch-Chr8:31967533 4.58E-250 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77504 PF00069 Pkinase 1.50E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1586 K08867 - csv:101222641 957.592