Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1637 ATGGGGTGTTTCATTAGCCGTGAGGCAACTTCAAGAAGTGTAGAGGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACCGAGTCTCATGTCCGGGTCGACGGTGTTCAGGAAAAAGAAGTAGAGCATGTAAATGCTAATGTAGAGGAAAGTAAGGAGGAGGAGCAGCAGGCTGATGGGGGGCAGGATCGCTCACGCAGGGAGCGGAGAAAGTCAAGGAAGGTTCCGAGGCCGAGTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCCGGGTGGCCATCTTGGCTCACGACCGTTTGTGGGGAGGCTCTCAATGGTTGGATTCCTCGAAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCTGAAAGTGTTAAATTTATGGCTAGAGAGATTCTCATCCTTAGGAGATTAAATCATCAAAATGTTGTGAAGTTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACCTGGTTTTTGAGTACATGGAGCATGATCTAGCTGGTCTTGCTGCAAATCCATCAATAAAATTTACAGAATCTCAGGTAAAATGTTTCATGCAACAACTGCTATCTGGACTGGAACACTGTCACAACCGTCGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGAGGAGTGCTTAAGATTGCTGACTTTGGGTTGGCTTCTTTCTTTGATCCAAATCACAAGCACCCTATGACTAGTCGGGTAGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTTGGTGTAGACCTCTGGAGTGCTGGCTGTATATTGGCTGAGTTATTAGCTGGGAGACCTATTATGCCTGGCCGCACAGAGGTAGAGCAACTGCACAAGATATATAAGCTTTGTGGTTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTGCCAAATGCAACCTTATTTAAGCCCAGAGATCCTTATAAAAGATGTATAAGGGAGACATTTAAAGATTTCCCGCCATCGTCACTACCCCTTATAGAAACGCTTCTTGCAATTGATCCAGTAGAACGAAAGACGGCAACAGATGTATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCTTGCAAACCCTCTAGCCTCCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGGCGGGATGATGAAGCTCGGAGGCTTAGAGCAGCTAGTAAACCCCAGGGAGATGGAACGAAGAAAACACGTGCACGTGTCAGGGCTCTTCCAGCTCCTGAAGCCAATGCCGAGCTACAAACAAATATCGACAGAAGACGCTTAATTACACATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCACCACACCAAGATGGAGCTCTCGGCTTTACGCTAGGATATTCACGTCATATTGACCCGTCCGGTGTTCCTCCCGACATACCATTCAGCTCAACTCTGTTTACTTATTCAAAGGATCCAGTCCAAGCCTGGTCTGGTCCACTGGTCCCTGCTGCTGGCACTGATGCTCCTTCTAGACAGAAGAAGCATGTGGGAGGT 1659 45.69 MGCFISREATSRSVEAPVDKGKRNQITESHVRVDGVQEKEVEHVNANVEESKEEEQQADGGQDRSRRERRKSRKVPRPSNLPNHSQGEQVAAGWPSWLTTVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHQNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPRDPYKRCIRETFKDFPPSSLPLIETLLAIDPVERKTATDVLNSEFFMTEPLACKPSSLPKYPPSKEMDARRRDDEARRLRAASKPQGDGTKKTRARVRALPAPEANAELQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPSGVPPDIPFSSTLFTYSKDPVQAWSGPLVPAAGTDAPSRQKKHVGG 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18103025 18116590 - MC06g1245 Mch6g1637 691084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1637 553 MobiDBLite consensus disorder prediction 419 451 - -
Mch6g1637 553 SUPERFAMILY Protein kinase-like (PK-like) 111 405 IPR011009 -
Mch6g1637 553 MobiDBLite consensus disorder prediction 532 553 - -
Mch6g1637 553 FunFam probable serine/threonine-protein kinase At1g54610 200 441 - -
Mch6g1637 553 MobiDBLite consensus disorder prediction 1 89 - -
Mch6g1637 553 SMART serkin_6 117 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1637 553 MobiDBLite consensus disorder prediction 13 66 - -
Mch6g1637 553 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Mch6g1637 553 Gene3D Transferase(Phosphotransferase) domain 1 200 439 - -
Mch6g1637 553 Pfam Protein kinase domain 117 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1637 553 CDD STKc_CDK9_like 117 401 - -
Mch6g1637 553 PANTHER CELL DIVISION PROTEIN KINASE 116 401 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch6g1637 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g1637 553 ProSiteProfiles Protein kinase domain profile. 117 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1637 553 MobiDBLite consensus disorder prediction 411 451 - -
Mch6g1637 553 FunFam probable serine/threonine-protein kinase At1g54610 104 199 - -
Mch6g1637 553 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1322 Mch-Chr3:16018860 Mch6g1637 Mch-Chr6:18103025 9.47E-232 dispersed
Mch5g0670 Mch-Chr5:4518006 Mch6g1637 Mch-Chr6:18103025 1.98E-286 dispersed
Mch6g1637 Mch-Chr6:18103025 Mch8g0091 Mch-Chr8:506886 1.98E-69 dispersed
Mch6g1637 Mch-Chr6:18103025 Mch8g2907 Mch-Chr8:31847432 1.37E-293 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77505 PF00069 Pkinase 1.10E-67 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1637 K08819 - csv:101215893 1030.78