Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1736 ATGGTGAAGTTGGCTTTGGGCTCACCCGGTGATTCTTTCAGCGTGGCTTCTCTGAAAGCATATCTGTCTGAGTTCATCGCCACCCTCCTCTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGCAAGCTGACGTCGGACGCGGCGTTGGATCCGCCGGGTCTGGTGGCGGTGGCGGTGGCTCATGCATTCGCGCTCTTCGTCGGAGTGTCTATGGCGGCCAACATCTCCGGTGGCCACCTCAACCCGGCGGTGACTTTCGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCCTCTTCTACTGGATTGCCCAGTCACTTGGCTCCATTGTCGCCTGCCTCCTCCTCCAATTTGTTACCAACGGCAAGAGTATTCCGACCCACGGCGTGGCGGCGGGACTGGGAGCCATTGAAGGTCTGGTGTTCGAGATAATAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCCAAAAAGGGCTCTCTCGGAATTATCGCCCCCATTGCTATTGGGTTCGTCGTCGGTGCCAACATCCTCGCTGCAGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGCTCCTTCGGCCCAGCTGTTGTGGGAGGAGACTTCTCTCAGATTTGGATCTACTGGCTCGGCCCACTTCTTGGAGGTGGGCTTGCTGGCCTTATTTATGGATACGTCTTGATCGGCTCTTATGACTCCGTTCCCGTCTCTGCGGATTATGCTTAA 753 58.17 MVKLALGSPGDSFSVASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGLVFEIIITFGLVYTVYATAADPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVGGDFSQIWIYWLGPLLGGGLAGLIYGYVLIGSYDSVPVSADYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19767608 19770278 - MC06g1295 Mch6g1736 691183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1736 250 CDD MIP 19 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 FunFam Probable aquaporin TIP1-1 2 249 - -
Mch6g1736 250 SUPERFAMILY Aquaporin-like 15 243 IPR023271 -
Mch6g1736 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Mch6g1736 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 PANTHER AQUAPORIN-8 4 237 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Mch6g1736 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 Gene3D Glycerol uptake facilitator protein. 2 248 IPR023271 -
Mch6g1736 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1736 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1710 Mch-Chr5:17824641 Mch6g1736 Mch-Chr6:19767608 6.67E-90 dispersed
Mch6g1736 Mch-Chr6:19767608 Mch8g0338 Mch-Chr8:2375034 1.92E-85 dispersed
Mch6g1736 Mch-Chr6:19767608 Mch1g0862 Mch-Chr1:12020213 3.69E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1736 K09873 - csv:101203925 430.639