Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1745 ATGTTCCTCACTCTCTCTCTCTCTCTCTCTCAAATGGCATCCTTCATCAGATTCTTGTTGTTGTTGTTGTTGATTTCCATCTCCGCCGCCGAGCGCCGCCGGCACAAGTGGGTCGGACCCAGCGGCCACAGCGTGATAGAAGTTGACGTGAATGGCTCCGGCGAATTCCTGTCGGTTCAGGCCGCCGTGGATGCAGTCCCCGATTACAACACCGTCAACACCCTCATCAGAATCAGCCCTGGATATTACGTAGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACGTTCCAAGGAGGGGGAAGGGAGGTGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGCCAGCAGCTGCGTACTTACAGAACCGCTTCGGTCACAGTTTTCGCCAATTACTTCTCTGCCCGAAACATCACCTTCAAGAATACGGCACCGGCGCCGATGCCCGGAATGCAAGGGTGGCAAGCGGCGGCGTTCCGGATTTCCGGCGACAAGGCCTACTTTTCCGGCTGCGGTTTCTACGGAGCTCAAGATACCCTATGCGACGACGCCGGCCGCCACTACTTCAAAGAATGCTACATCCAAGGATCCATAGACTTCATTTTCGGAAACGGCCGTTCCATGTACAAGGATTGCGAGCTGCACTCCATAGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGGACGAGAAGACCGGGTTCGCTTTTGTTCGGTGCAAGGTGACCGGTTCTGGGCCTGTGTACGTGGGGCGAGCCATGGGCCAGTACTCTAGAATCGTGTACGCGTATACTTACTTTGATGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACAGTATTTTTTGGAGTATACAACTGCTGGGGCCCAGGAGCGAGTAAAGTGAAGGGAGTATCATGGGCCAGGGAGTTGGAGTTTGAGGAGGCCCATCCTTTTCTTGTGAAGAGCTTTGTCAATGGCAGGCACTGGATTGCACCTTCTGATGCTTAG 1044 55.36 MFLTLSLSLSQMASFIRFLLLLLLISISAAERRRHKWVGPSGHSVIEVDVNGSGEFLSVQAAVDAVPDYNTVNTLIRISPGYYVEKVVVPATKPYITFQGGGREVTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNITFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIQGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFAFVRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYNCWGPGASKVKGVSWARELEFEEAHPFLVKSFVNGRHWIAPSDA 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19872971 19876265 - MC06g1303 Mch6g1745 691192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1745 347 Gene3D - 42 346 IPR012334 -
Mch6g1745 347 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Mch6g1745 347 FunFam Pectinesterase 41 344 - -
Mch6g1745 347 Pfam Pectinesterase 48 338 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g1745 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 343 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Mch6g1745 347 SUPERFAMILY Pectin lyase-like 45 344 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1253 Mch-Chr11:8910276 Mch6g1745 Mch-Chr6:19872971 9.35E-103 dispersed
Mch6g0863 Mch-Chr6:6001203 Mch6g1745 Mch-Chr6:19872971 7.57E-107 dispersed
Mch6g1745 Mch-Chr6:19872971 Mch9g0630 Mch-Chr9:4728807 1.71E-87 dispersed
Mch6g1745 Mch-Chr6:19872971 Mch2g1109 Mch-Chr2:7523865 1.72E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1745 - - - 0.0