Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1777 ATGTCATCCTCTTCTTCTTCTCCAACTCCTCCACCCTGTCATCCTCTACCGCCGCCGCCGCCGCCGCCGCTGGACCACCACCTCCCCGCCGCCGAGCAGCTCTGCTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTTACTGTCCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTTCTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTTTTCTCTCCTTCTTCTCACAACATTCTGGAGAATATCCCCACCCCGAATTCGAATTTCCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGTGGAGTCACTGATGAGCTCCCAAGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCTTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGCGCCGCGGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 699 51.36 MSSSSSSPTPPPCHPLPPPPPPPLDHHLPAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSSHNILENIPTPNSNFLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLMKDNGFYASANVGVSHF 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20335000 20342635 - MC06g1330 Mch6g1777 691224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1777 232 Gene3D High mobility group box domain 139 210 IPR036910 -
Mch6g1777 232 SUPERFAMILY HMG-box 138 187 IPR036910 -
Mch6g1777 232 Pfam YABBY protein 31 194 IPR006780 GO:0007275(InterPro)
Mch6g1777 232 MobiDBLite consensus disorder prediction 127 147 - -
Mch6g1777 232 PANTHER PROTEIN YABBY 6-RELATED 31 203 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Mch6g1777 232 MobiDBLite consensus disorder prediction 8 24 - -
Mch6g1777 232 CDD HMG-box_SF 148 184 - -
Mch6g1777 232 FunFam Axial regulator YABBY 139 210 - -
Mch6g1777 232 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1777 K25796 - - csv:101214748 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0711 Mch-Chr6:4887665 Mch6g1777 Mch-Chr6:20335000 3.41E-53 dispersed
Mch6g1777 Mch-Chr6:20335000 Mch8g3074 Mch-Chr8:33217996 2.88E-52 dispersed
Mch8g0030 Mch-Chr8:181160 Mch6g1777 Mch-Chr6:20335000 4.12E-35 transposed
Mch9g2062 Mch-Chr9:21735622 Mch6g1777 Mch-Chr6:20335000 3.30E-38 transposed
Mch9g2254 Mch-Chr9:22896056 Mch6g1777 Mch-Chr6:20335000 6.71E-42 transposed
Mch10g1534 Mch-Chr10:15271343 Mch6g1777 Mch-Chr6:20335000 2.48E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g2062 . 16 171 C2C2-YABBY Transcription Factor Family AT1G69180 62.2 8.0e-47 183.7
Mch6g1777 . 74 233 C2C2-YABBY Transcription Factor Family AT2G45190 59.8 2.0e-44 175.6
Mch2g0212 . 1 167 C2C2-YABBY Transcription Factor Family AT1G08465 67.6 6.6e-57 217.2
Mch6g1777 . 30 222 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.9e-44 175.3
Mch6g0711 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 53.6 4.9e-44 174.5
Mch8g3074 . 5 181 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 4.2e-43 171.4
Mch6g1777 . 41 231 C2C2-YABBY Transcription Factor Family AT4G00180 54.6 4.7e-51 198.0
Mch9g2254 . 1 177 C2C2-YABBY Transcription Factor Family AT1G23420 53.0 1.5e-41 166.8
Mch6g0711 . 7 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.6 6.1e-62 233.8
Mch8g3074 . 10 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.6 2.3e-61 231.9
Mch2g0212 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 60.5 2.7e-49 191.8
Mch6g1777 . 30 195 C2C2-YABBY Transcription Factor Family AT2G26580 53.8 5.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43588 PF04690 YABBY 6.60E-71 CL0114 Mch TF