Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g1777 | ATGTCATCCTCTTCTTCTTCTCCAACTCCTCCACCCTGTCATCCTCTACCGCCGCCGCCGCCGCCGCCGCTGGACCACCACCTCCCCGCCGCCGAGCAGCTCTGCTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTTACTGTCCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTTCTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTTTTCTCTCCTTCTTCTCACAACATTCTGGAGAATATCCCCACCCCGAATTCGAATTTCCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGTGGAGTCACTGATGAGCTCCCAAGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCTTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGCGCCGCGGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA | 699 | 51.36 | MSSSSSSPTPPPCHPLPPPPPPPLDHHLPAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSSHNILENIPTPNSNFLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLMKDNGFYASANVGVSHF | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 20335000 | 20342635 | - | MC06g1330 | Mch6g1777 | 691224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g1777 | 232 | Gene3D | High mobility group box domain | 139 | 210 | IPR036910 | - | |
Mch6g1777 | 232 | SUPERFAMILY | HMG-box | 138 | 187 | IPR036910 | - | |
Mch6g1777 | 232 | Pfam | YABBY protein | 31 | 194 | IPR006780 | GO:0007275(InterPro) | |
Mch6g1777 | 232 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
Mch6g1777 | 232 | PANTHER | PROTEIN YABBY 6-RELATED | 31 | 203 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
Mch6g1777 | 232 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Mch6g1777 | 232 | CDD | HMG-box_SF | 148 | 184 | - | - | |
Mch6g1777 | 232 | FunFam | Axial regulator YABBY | 139 | 210 | - | - | |
Mch6g1777 | 232 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0711 | Mch-Chr6:4887665 | Mch6g1777 | Mch-Chr6:20335000 | 3.41E-53 | dispersed | |
Mch6g1777 | Mch-Chr6:20335000 | Mch8g3074 | Mch-Chr8:33217996 | 2.88E-52 | dispersed | |
Mch8g0030 | Mch-Chr8:181160 | Mch6g1777 | Mch-Chr6:20335000 | 4.12E-35 | transposed | |
Mch9g2062 | Mch-Chr9:21735622 | Mch6g1777 | Mch-Chr6:20335000 | 3.30E-38 | transposed | |
Mch9g2254 | Mch-Chr9:22896056 | Mch6g1777 | Mch-Chr6:20335000 | 6.71E-42 | transposed | |
Mch10g1534 | Mch-Chr10:15271343 | Mch6g1777 | Mch-Chr6:20335000 | 2.48E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43588 | PF04690 | YABBY | 6.60E-71 | CL0114 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch6g1777 | K25796 | - | csv:101214748 | 400.979 |