Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1777 ATGTCATCCTCTTCTTCTTCTCCAACTCCTCCACCCTGTCATCCTCTACCGCCGCCGCCGCCGCCGCCGCTGGACCACCACCTCCCCGCCGCCGAGCAGCTCTGCTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTTACTGTCCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTTCTGCCTTCTACTAATCAGTTTCATCAGCTTGGCCACTCTTTTTTCTCTCCTTCTTCTCACAACATTCTGGAGAATATCCCCACCCCGAATTCGAATTTCCTCATCAACCAGTTTGCAGCTACTAACAATTTTGGAATGCCATCTCGTGGAGTCACTGATGAGCTCCCAAGGCCCCCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCTTACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGCGCCGCGGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 699 51.36 MSSSSSSPTPPPCHPLPPPPPPPLDHHLPAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSTNQFHQLGHSFFSPSSHNILENIPTPNSNFLINQFAATNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLMKDNGFYASANVGVSHF 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20335000 20342635 - MC06g1330 Mch6g1777 691224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1777 232 Gene3D High mobility group box domain 139 210 IPR036910 -
Mch6g1777 232 SUPERFAMILY HMG-box 138 187 IPR036910 -
Mch6g1777 232 Pfam YABBY protein 31 194 IPR006780 GO:0007275(InterPro)
Mch6g1777 232 MobiDBLite consensus disorder prediction 127 147 - -
Mch6g1777 232 PANTHER PROTEIN YABBY 6-RELATED 31 203 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Mch6g1777 232 MobiDBLite consensus disorder prediction 8 24 - -
Mch6g1777 232 CDD HMG-box_SF 148 184 - -
Mch6g1777 232 FunFam Axial regulator YABBY 139 210 - -
Mch6g1777 232 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0711 Mch-Chr6:4887665 Mch6g1777 Mch-Chr6:20335000 3.41E-53 dispersed
Mch6g1777 Mch-Chr6:20335000 Mch8g3074 Mch-Chr8:33217996 2.88E-52 dispersed
Mch8g0030 Mch-Chr8:181160 Mch6g1777 Mch-Chr6:20335000 4.12E-35 transposed
Mch9g2062 Mch-Chr9:21735622 Mch6g1777 Mch-Chr6:20335000 3.30E-38 transposed
Mch9g2254 Mch-Chr9:22896056 Mch6g1777 Mch-Chr6:20335000 6.71E-42 transposed
Mch10g1534 Mch-Chr10:15271343 Mch6g1777 Mch-Chr6:20335000 2.48E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43588 PF04690 YABBY 6.60E-71 CL0114 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1777 K25796 - csv:101214748 400.979