Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1850 ATGAACTACGGCAAGCTCCACTCCACCAGCTCCGGCGACACGCCGGCCAACTTCGAACTATCCAATTCCAATTCATCCATTTCCTCCCCCAACCGGCGGACAAGAACAAGAGTTGTTCTTCTCTCCTTGCTCTCCATCCTCCTCATCATGGCCTCTGCCATCTCTGCCGTCGTCTTTGTCCGCTCTCACATTGGCCGCGGCGGTGAGAGCGGCCTCGGGCTGGCTCACAAGCCGAGCCAGGCCATCTCCCGGGCGTGCAGTCGCACCCTGTACCCGGCCGTGTGCGTGTCGTCGCTGGTGGAGTTCCCCGGCGCGCTCGCCGCCGACGTCCACGACCTGGTTCACATCTCCCTGAATGTGACTCTGCAGCGTCTCACAAAGGCCCTCTACTCCTCCTCACAAATTCCCGTCTCCCAAATCTCCGACCCCCTCCTCCTCTCCGCCTTCGCCGACTGCATCGAGCTTCTCGACGACGCCGTCGACGCCTTCTCCCGCTCTCTCTTCTCCACCGCCGCCTCCAATCACGACGTCCTCACTTGGCTCAGCGCCGCCTTGACTTATCACGACACGTGTACCGAGGGCCTTGCTGACGTCAGCGCCGGCCAGGTCAAGGATCAGATGACTGCCAAGCTGGCCGACTTGTCGCAGCTGATTAGTAACTCGTTGGCCATATTTTCCGGGTTCGGCGGCGGGACGGGTGAGTTCTCCGGTGTGCCCGTACAGAACAGGCGGCGGCTGATGGAGGCGGAGTGGCCGCAGGAGAATGGCGGAGAGGAGTTTCCGGAATGGGTCAGCCGGAAGGATAGGCAACTTCTGGGTTCTCCGATTTCGGCGATCCAAGCCGATATCGTCGTCGCCAAGGACGGCACCGGGAAGTACAAGACCGTCGCGGAGGCCATCGCGGCGGCTCCGTCGTCCAGTGGCCGCCGTACGGTCATCTACGTCAAGGCTGGAAAGTACGTAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTCGTGGGAGATGGGAAGGGCATAACCGTCATTTCAGGTGGAAAAAGTGTTTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGCTTCTGGGACGGGGATCATTCTTCGTGACATGACATTCGAGAACACAGCAGGGCCGGGAAGGCACCAAGCGGTGGCGCTGCGTGTGAGTGCGGACCACGCGGTCGTGTTTCGGTGTAACATCATTGGGTACCAGGACACTCTCTATGTACACTCCAATCGACAATTTTACCGCGAGTGTGACATATATGGTACTGTAGATTTCATCTTCGGAAACGCCGTAGTGGTGTTCCAAAGCTGCAACATCTACGCTCGAAAGCCGATGCCCGGCCAGAAGAACACTATAACCGCCCAAGATCGGAAGGACCCGAACCAAAACACCGGTATCTCCATCCACGCCTGCAAGATTCTTGCAGCATCTGATCTGGAAGGTTCCAAAGGTAGTTATCCGACGTTCTTGGGGAGGCCGTGGAAATTATACTCTAGGGTAGTCTACATGGTATCATCCATGGGTGACCACATCCACCCGCGGGGCTGGCTCGAGTGGCAGGGCTCCTTCGCGCTCGATACTTTATACTACGGTGAGTACATGAATTCTGGACCTGGTGCAGCGGTCGGGCAACGGGTCAAGTGGCCGGGTTATCGGGTCATAACGTCCACCGTTGAAGCGGGCAAGTTCACGGTTGGGCAGTTTATATACGGCTCCGCTTGGCTGCCGTCCACCGGCGTGTCATTCTCCGCCGGCTTATCTGCTAGCTAA 1794 57.8 MNYGKLHSTSSGDTPANFELSNSNSSISSPNRRTRTRVVLLSLLSILLIMASAISAVVFVRSHIGRGGESGLGLAHKPSQAISRACSRTLYPAVCVSSLVEFPGALAADVHDLVHISLNVTLQRLTKALYSSSQIPVSQISDPLLLSAFADCIELLDDAVDAFSRSLFSTAASNHDVLTWLSAALTYHDTCTEGLADVSAGQVKDQMTAKLADLSQLISNSLAIFSGFGGGTGEFSGVPVQNRRRLMEAEWPQENGGEEFPEWVSRKDRQLLGSPISAIQADIVVAKDGTGKYKTVAEAIAAAPSSSGRRTVIYVKAGKYVEENLKVGRKKTNLMFVGDGKGITVISGGKSVFDKVTTFRTATFAASGTGIILRDMTFENTAGPGRHQAVALRVSADHAVVFRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAVVVFQSCNIYARKPMPGQKNTITAQDRKDPNQNTGISIHACKILAASDLEGSKGSYPTFLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEAGKFTVGQFIYGSAWLPSTGVSFSAGLSAS 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21011905 21016758 - MC06g1384 Mch6g1850 691297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1850 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 228 IPR035513 -
Mch6g1850 597 PANTHER PECTINESTERASE 40 585 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch6g1850 597 SMART PMEI_2 77 224 IPR006501 GO:0004857(InterPro)
Mch6g1850 597 SUPERFAMILY Pectin lyase-like 277 593 IPR011050 -
Mch6g1850 597 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Mch6g1850 597 Gene3D - 276 594 IPR012334 -
Mch6g1850 597 Pfam Plant invertase/pectin methylesterase inhibitor 81 224 IPR006501 GO:0004857(InterPro)
Mch6g1850 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 226 IPR035513 -
Mch6g1850 597 Pfam Pectinesterase 282 579 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch6g1850 597 CDD PMEI-like_3 85 230 - -
Mch6g1850 597 MobiDBLite consensus disorder prediction 1 30 - -
Mch6g1850 597 FunFam Pectinesterase 276 594 - -
Mch6g1850 597 NCBIfam pectinesterase inhibitor domain 50 226 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1850 Mch-Chr6:21011905 Mch9g0697 Mch-Chr9:5247033 2.57E-159 dispersed
Mch10g1499 Mch-Chr10:14955190 Mch6g1850 Mch-Chr6:21011905 6.83E-144 transposed
Mch1g1774 Mch-Chr1:18113086 Mch6g1850 Mch-Chr6:21011905 2.29E-153 transposed
Mch3g1398 Mch-Chr3:16476839 Mch6g1850 Mch-Chr6:21011905 5.59E-10 transposed
Mch4g1433 Mch-Chr4:17781567 Mch6g1850 Mch-Chr6:21011905 3.33E-132 transposed
Mch10g0064 Mch-Chr10:342442 Mch6g1850 Mch-Chr6:21011905 1.03E-274 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1850 - - - 0.0