Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1858 ATGACTTATCTGCAAGAGAAAATTGTGAGGTTTCAGGACTGGAATTCAGATAAAACTTCAAGGGGTTTATATTCTACAGATAACACTTTAAATTCTGGAAAGAATGGGACAAGGGCCGACTTAGTTTCAGAAAAACCTCACAAAGGCTTGGATACTGGTTCTTACAGGACTAATAGAATTAAGAAATCCTTGAAATCATCTTCTTTCAATAAATTTATGTCCAGAGGTTTTGGAACCGGAAAAAAAGTACTTGACCCACAGGGGTCTTTTCTCCAAAAGTGGAATAAGATATTTGTGCTGTCTTGTATAATTGCAGTCTCGTTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGATGAGAAGAAATGTCTGGGGCTGGACACGAAGATGGAGATTACAGCTAGTGTGCTGCGTTCTTTCACAGACATATTTTATATTTTACATATTGTTTTCCAATTTCGTACGGGATTTATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTTTAGTTGAAGATGCTTGGGCAATAGCAAAGAGATATCTGTCATCGTACTTTCTGATTGACATTCTTGCAGTCCTCCCACTTCCACAAATAGTGATTCTGATCATTATTCCAAAAATGGGAGGCCCGAGATCGTTGAATACCAAGGACTTGCTGAAATTTGTTGTTTTTTTCCAATATGTGCCTCGGTTTCTTAGAATCTATCCTTTATATAAGGAAGTTACAAGAACTTCTGTACTCACTGAAACTGCATGGGCTGGAGCTGCATTTAACCTCTTTCTCTACATGCTGGCAAGTCATGTCTTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGGGAAACTACATGCTGGCAGAGGGCTTGTCATAATCACACTGGTTGTGTTCCTACTTCACTGTATTGTGATGTCAAACCAGGAAATAACTCATTTTTGAATAGCTCGTGTCCTATACTAGATGAAGACAAAACAGTTTTTGATTTTGGAATATTTCTTGATGCTCTCAATTCTGGTGTTGTGGAGTCCATGGATTTTCCACAGAAGTTCTTTTACTGTTTCTGGTGGGGTCTGAGAAATCTAAGTTCCCTGGGTCAAAATCTCCAGACAAGCACATACGTATGGGAAATTTGCTTTGCTGTTTTCATCTCCATCTCTGGCTTAGTACTGTTTTCATTTCTCATAGGGAACATGCAGACATATCTGCAATCAACCACCACAAGATTGGAAGAAATGAGGGTTAGAAGGAGGGATGCAGAACAGTGGATGTCCCATCGTTTACTCCCCGAGAGCCTCCGAGAGCGAATCAGGAGGTACGAACAGTACAAATGGCAGGAAACAAGAGGTGTTGATGAAGAGAATCTGGTTCGAAATCTTCCCAAAGATCTCAGAAGGGACATAAAACGCCATCTCTGCTTGTCTCTGCTAATGAGGGTACCCATATTTGAAAAAATGGATGAACAATTGTTGGATGCAATGTGTGACCGTCTTAAGCCGGTACTATACACGGAAGAAAGTTACATTGTTAGAGAAGGAGACCCAGTAGATGAGATGATCTTCATTATGCGAGGCAAGTTGTCCTCTGTGACTACAAACGGTGGAAGAACTGGTTTCTTTAATTCTGAACATCTCAAGGCGGGCGATTTCTGTGGTGAAGAGTTACTGACATGGGCTCTGGATCCACATTCCTCGTCCAATCTGCCACTTTCGACGAGAACTGTTCTAACCATTTCTGAAGTTGAAGCATTTGCTTTAAAGGCCGACAACTTAAAGTTTGTAGCCTCACAGTTCCGACGGCTTCACAGCAAGCAGCTGCGGCACACTTTCAGGTTTTATTCGCAGCAATGGAGAACATGGGCAGCGTGCTTTATACAAGCAGCATGGCGTCGATACAGCAGAAAGAAGCTCGAACAGTCTCTCTTGGAAGAAGAGAACAGGTTGAAAGATGCATTGGCCAAGACAGGTGGGAGTTCTCCTAGTTTAGGTGCCACCATCTATGCATCCAGATTTGCAGCGAACATCCTTCGAACAATTCGACGTACAAGTTCTCGGAAGGCCAGGATACCGGAGAGAATACCGCCATTGTTGCTGCAGAAACCAGCAGAGCCTGATTTCACCTCTGAGGAGAATAGTTGA 2139 42.08 MTYLQEKIVRFQDWNSDKTSRGLYSTDNTLNSGKNGTRADLVSEKPHKGLDTGSYRTNRIKKSLKSSSFNKFMSRGFGTGKKVLDPQGSFLQKWNKIFVLSCIIAVSLDPLFFYVPVIDDEKKCLGLDTKMEITASVLRSFTDIFYILHIVFQFRTGFIAPSSRVFGRGVLVEDAWAIAKRYLSSYFLIDILAVLPLPQIVILIIIPKMGGPRSLNTKDLLKFVVFFQYVPRFLRIYPLYKEVTRTSVLTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACHNHTGCVPTSLYCDVKPGNNSFLNSSCPILDEDKTVFDFGIFLDALNSGVVESMDFPQKFFYCFWWGLRNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVRRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLSLLMRVPIFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMIFIMRGKLSSVTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSSNLPLSTRTVLTISEVEAFALKADNLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSRKKLEQSLLEEENRLKDALAKTGGSSPSLGATIYASRFAANILRTIRRTSSRKARIPERIPPLLLQKPAEPDFTSEENS 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21088339 21095466 - MC06g1390 Mch6g1858 691305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1858 712 Gene3D Jelly Rolls 480 600 IPR014710 -
Mch6g1858 712 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 685 - -
Mch6g1858 712 SMART cnmp_10 482 613 IPR000595 -
Mch6g1858 712 SUPERFAMILY cAMP-binding domain-like 411 604 IPR018490 -
Mch6g1858 712 Pfam Cyclic nucleotide-binding domain 503 590 IPR000595 -
Mch6g1858 712 Gene3D Helix hairpin bin 408 473 - -
Mch6g1858 712 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Mch6g1858 712 ProSiteProfiles cAMP/cGMP binding motif profile. 482 566 IPR000595 -
Mch6g1858 712 Pfam Ion transport protein 95 409 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g1858 712 Coils Coil 634 654 - -
Mch6g1858 712 CDD CAP_ED 482 613 IPR000595 -
Mch6g1858 712 Gene3D - 94 406 - -
Mch6g1858 712 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Mch6g1858 712 SUPERFAMILY Voltage-gated potassium channels 85 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0080 Mch-Chr10:449699 Mch6g1858 Mch-Chr6:21088339 6.71E-166 dispersed
Mch10g0082 Mch-Chr10:462197 Mch6g1858 Mch-Chr6:21088339 0 dispersed
Mch5g0471 Mch-Chr5:3187365 Mch6g1858 Mch-Chr6:21088339 7.57E-213 dispersed
Mch6g1858 Mch-Chr6:21088339 Mch8g1531 Mch-Chr8:11952081 3.89E-212 dispersed
Mch10g0545 Mch-Chr10:3574706 Mch6g1858 Mch-Chr6:21088339 1.62E-10 transposed
Mch3g1787 Mch-Chr3:19059399 Mch6g1858 Mch-Chr6:21088339 1.25E-125 transposed
Mch8g1592 Mch-Chr8:12749781 Mch6g1858 Mch-Chr6:21088339 1.16E-256 transposed
Mch8g2727 Mch-Chr8:30492069 Mch6g1858 Mch-Chr6:21088339 5.63E-262 transposed
Mch10g0079 Mch-Chr10:445364 Mch6g1858 Mch-Chr6:21088339 4.36E-166 wgd
Mch5g0470 Mch-Chr5:3180785 Mch6g1858 Mch-Chr6:21088339 3.37E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1858 K05391 - csv:101221781 1312.36