Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1875 ATGAGCCAGAAAAGGGAGCTCGAGCTCAAGCTCGGCGTCTTTGTTTTGTCTGCAGTCTTCTGGTTTGCAGCGACCTTTTCTCTGGTAATGTCGGAGACAATTGAAGACAAGGAAGCTCTGCTTAGTTTTCTCAGCAAAATGGCTCATCATTCACACTCGCTCAATTGGAAGAAGAGCACTTCTTTATGCAGAGAATGGATGGGAGTTCATTGCAACAGTGATGAATCCCGAGTCGTAGCTCTGCAATTGCCCGAAGTTGGATTACACGGTCCTGTCCCAATCGACACTCTTAGTCGACTATCGGCACTTGAAACTCTAAGCCTTGAATCAAACTACATATCAGGGCCTTTCCCTTCCGACTTCCAAAAGCTGCGGAATCTCAACTCACTCAACTTGCAAAGCAACAAGTTTTCTGGTCCATTGCCATCAGATTTCTCAATATGGAAGAATCTTCACATCATTGACTTTTCAAACAATGCCTTCAATGGGAGCATCCCTCCGATTTCAAACACGACGCGTCTCACGGCTTTAAATCTTGCCAATAACTCACTCTCTGGCAAGATTCCAGACCTCAACCTTCCCAGTTTGCGAAAGTTGGATCTTTCAAACAACAATCTCACAGGACCGGTCCCTCAGTCCCTTCAACGATTTCCAAGTCGAGCATTCTCTGGTAACAACCTTACGCCTGAAGATGCCGTTCCTCCAGCTCGTCCTGGACCGTCACCCAAAGCTCAACCATCAAAAAGAGGCACAACAACACTTGGTGAAGCAGCAATATTAGGCATCATAATTGGAGGTTCTGCAATGGGGTTAGTTCTAGCAGCCATTCTAATGATAATCTGCTGCTCAAACAGAGGAATAAAAAGCAAAGCCTCATCCAAACTGAACAAGAAAGAACAGTCTGTGAAGAAAAGGGTGTCTGAGACACAAAGCAACAGCAACAATCTCAAGTTTTTTCAGAGTTACAGTCTCGCATTTGACTTGGAGGACTTGCTGAGGGCGTCTTCGGAGGTGCTCGGGAAGGGGACGTCCGGGACAACTTATAAGGCGACACTGGAAGACGGTAACGCCGTGGTGGTGAAGAGGTTGAAGGAAGTGAGTGCTTCAAAGAGGGAATTTGAGCAGCAAATGGAGGTGCTGGGGAGAATTGAACATGAAAATGTGTGTGCCTTGAGGGCTTATTATTATTCAAAGGATGAGAAGCTTATGGTGTTTGATTTCTACCAACATGGAAGTGTTTCTGCAATGTTGCATGGTGGGAGAGAGAAAGGTGAGTCACTACTGGACTGGGAAACTCGACTCCGAATCGCCATTGGCGCAGCCAGAGGAATCGCTCACATCCACTCAGACAACTGCGGCAAACTCGTCCATGGCAACATCAAGGCTTCCAATATCTTCCTCAACTCCGACGGCTACGGCTGCGTCTCCGACGCCGGCGTCGCCGCCCTGATGAACCTCATGGCCCCTCCGGCGACGAGAGCGGCCGGATACCGCGCTCCCGAAGTCAAAGACTCGCGCAAAGCATCTCACGCCTCCGATACCTACAGCTTCGGCGTCGTGCTTCTCGAGCTCCTCACCGGAAAGTTTCCGCTCCACACGAAGGGCGGCGACCAGATCATCCACCTGGTGCGGTGGGTGAACGCGGTGGTCCGAGAGGAGTGGACGGCGGAGGTGTTCGATGTGGAGCTTTTGAGGTTTCCGAACATAGAGGAGGAGATGGTGGAGACGCTGCAATTAGGGCTCGCTTGCGTCGGGAGAGTTCCGGAGGATCGGCCGACAATGGCGGAGGTTGCGGCTCGTCTGGAGGGAATTCGCCGGGTCAGCGGCGGAGGAAGCCAACCGGAGCCGCCGCCGCCATTGCCATCGGAAGGTGGAGCAGAAGATTCGATCCATATTCAGGTGAATGTGGCTGAGGGTGAAGGTTGA 1926 50.99 MSQKRELELKLGVFVLSAVFWFAATFSLVMSETIEDKEALLSFLSKMAHHSHSLNWKKSTSLCREWMGVHCNSDESRVVALQLPEVGLHGPVPIDTLSRLSALETLSLESNYISGPFPSDFQKLRNLNSLNLQSNKFSGPLPSDFSIWKNLHIIDFSNNAFNGSIPPISNTTRLTALNLANNSLSGKIPDLNLPSLRKLDLSNNNLTGPVPQSLQRFPSRAFSGNNLTPEDAVPPARPGPSPKAQPSKRGTTTLGEAAILGIIIGGSAMGLVLAAILMIICCSNRGIKSKASSKLNKKEQSVKKRVSETQSNSNNLKFFQSYSLAFDLEDLLRASSEVLGKGTSGTTYKATLEDGNAVVVKRLKEVSASKREFEQQMEVLGRIEHENVCALRAYYYSKDEKLMVFDFYQHGSVSAMLHGGREKGESLLDWETRLRIAIGAARGIAHIHSDNCGKLVHGNIKASNIFLNSDGYGCVSDAGVAALMNLMAPPATRAAGYRAPEVKDSRKASHASDTYSFGVVLLELLTGKFPLHTKGGDQIIHLVRWVNAVVREEWTAEVFDVELLRFPNIEEEMVETLQLGLACVGRVPEDRPTMAEVAARLEGIRRVSGGGSQPEPPPPLPSEGGAEDSIHIQVNVAEGEG 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21278047 21281468 - MC06g1404 Mch6g1875 691322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1875 641 Pfam Leucine rich repeat 94 137 IPR001611 GO:0005515(InterPro)
Mch6g1875 641 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524(InterPro)
Mch6g1875 641 FunFam Probable inactive receptor kinase RLK902 33 192 - -
Mch6g1875 641 PRINTS Leucine-rich repeat signature 174 187 - -
Mch6g1875 641 PRINTS Leucine-rich repeat signature 193 206 - -
Mch6g1875 641 MobiDBLite consensus disorder prediction 604 628 - -
Mch6g1875 641 ProSiteProfiles Protein kinase domain profile. 333 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1875 641 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 408 612 - -
Mch6g1875 641 Gene3D Phosphorylase Kinase; domain 1 296 407 - -
Mch6g1875 641 Gene3D Ribonuclease Inhibitor 33 236 IPR032675 -
Mch6g1875 641 Gene3D Transferase(Phosphotransferase) domain 1 409 610 - -
Mch6g1875 641 MobiDBLite consensus disorder prediction 207 226 - -
Mch6g1875 641 MobiDBLite consensus disorder prediction 207 250 - -
Mch6g1875 641 Pfam Protein kinase domain 336 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1875 641 FunFam pollen receptor-like kinase 1 302 407 - -
Mch6g1875 641 SUPERFAMILY L domain-like 52 217 - -
Mch6g1875 641 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Mch6g1875 641 SUPERFAMILY Protein kinase-like (PK-like) 336 602 IPR011009 -
Mch6g1875 641 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515(InterPro)
Mch6g1875 641 Pfam Leucine Rich Repeat 174 190 IPR001611 GO:0005515(InterPro)
Mch6g1875 641 PANTHER OS05G0588300 PROTEIN 19 613 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1875 Mch-Chr6:21278047 Mch6g1931 Mch-Chr6:21803876 4.10E-192 dispersed
Mch10g0102 Mch-Chr10:592577 Mch6g1875 Mch-Chr6:21278047 1.94E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77509 PF00069 Pkinase 2.10E-33 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1875 - - - 0.0