Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1931 ATGGAAGCTCTGCGGATTTTCTGCTTTGTTTTCTTTCTGGGGTTGGTCTATTCGCCGAGTAACGCTGACCCAGTTGAAGACAAGCGAGCTCTACTTGATTTCGTGAAGAATCTCCCTCACTCTCGCTCGCTTAATTGGAATGAGTCGTCTCCGGTTTGCAATTACTGGACTGGTATAACTTGCAGTGAGGATGAATCTCGCGTTATAGCTGTTCGGTTGCCCGGAGTTGGCTTCCACGGCCCGATTCCGGCGAATACTCTCAGCCGTCTCACGGCGCTGCAAATATTGAGCCTCAGATCCAACCGTATAACCGGGGATTTCCCTTCTGATTTCTCAAATCTTAGCGATTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTACCTTCCAATTTCTCTGTCTGGAAGAATCTCACATTTGTGAATCTCTCTAACAATGGCTTCAATGGCCGCATTCCTCCTTCACTGTCTAATTTAACAGAGCTCACGGGTTTGAATCTCGCCAATAACTCACTCTCGGGAGAAATCCCTGACCTGAAAATCCCCAAATTACAGGTTCTGGATGTGTCTAACAACAACTTGAGTGGGAGTGTGCCTAAATCGCTGCAGAGATTTCCAAGGTCCGTATTTGTAGGCAATGAGGTGTCTTTCGAAAGTCCTTTACCGAACAATCCTCCTGTGCCCCCGCCATTGCCCAAGTCGAATGCGAAGCCTAAGAATTCTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATCATAATAGCTGGAGGCGTTTTGGGGCTTCTGGCATTTGGGTTTCTGATACTTGTTTGCTGCTCGAGAAGGAAGAGGGAAGACGAATATTCGGGGAATTTGCAGAAGGGCGGAATGTCGCCGGAGAAGGTGATATCTAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAAGGGTGTCATTATGCTTTTGACTTGGAGGATTTGCTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGGACTTTTGGCACTGCATATAAAGCAATTCTGGAGGATGCTACTACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCCGGGAAACGCGATTTCGAGCAGCAAATGGAGATCGTTGGCAGTATCAGGCATGAGAATGTGGTTGAGTTGAAAGCCTATTATTATTCCAAGGATGAGAAGCTGATGGTTTATGATTTCTACAGTCAGGGAAGCGTCTCGGCTATGTTACACGGAAAACGCGGAGAGGAAAAAACGCCATTAGACTGGGACTCAAGACTAAGAATTGCAGTTGGTGCAGCGCGAGGGATTGCCCGTGTCCATGCCGAAAGCGGAGGGAAGCTCGTCCATGGAAATGTGAAATCGTCAAACATCTTTGTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACCATAACGAACTCGCTCACTCCACCGATATCCCGTGCTGCTGGTTATCGAGCCCCAGAGGTGACAGACACCCGAAAGGCAACACAGGCTTCTGATGTTTTCAGCTTCGGCGTGGTGCTCCTTGAGCTTCTAACTGGAAAGTCCCCGATACATGCGACAGGTGGCGAAGAGATCGTGCACTTGGTGAGATGGGTTCATTCAGTTGTCCGAGAGGAATGGACAGCTGAAGTATTTGATGTAGAGCTGATGAGGTATCCCAATATAGAGGAAGAAATGGTTGAGATGTTACAGATAGCCTTATCATGTGTAGCAAGGATACCGGATCAGAGACCGAAAATGGGTGAAGTAGTGAAGATGATAGAGAACGTTCGACCGATGGAAGCCGAGAATCGACCTTCTTCCACAAACCGATCTGAAAGTTCAATGCAGCAACAGCAAGCTGTTGGGGTTGAGACAGAAAATTCAACCTCTCAGTCTCATTGA 1905 47.4 MEALRIFCFVFFLGLVYSPSNADPVEDKRALLDFVKNLPHSRSLNWNESSPVCNYWTGITCSEDESRVIAVRLPGVGFHGPIPANTLSRLTALQILSLRSNRITGDFPSDFSNLSDLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPPSLSNLTELTGLNLANNSLSGEIPDLKIPKLQVLDVSNNNLSGSVPKSLQRFPRSVFVGNEVSFESPLPNNPPVPPPLPKSNAKPKNSGGLGEAALLGIIIAGGVLGLLAFGFLILVCCSRRKREDEYSGNLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFYSQGSVSAMLHGKRGEEKTPLDWDSRLRIAVGAARGIARVHAESGGKLVHGNVKSSNIFVNSQQYGCVSDLGLATITNSLTPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMGEVVKMIENVRPMEAENRPSSTNRSESSMQQQQAVGVETENSTSQSH 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21803876 21808029 + MC06g1445 Mch6g1931 691378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1931 634 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Mch6g1931 634 MobiDBLite consensus disorder prediction 224 238 - -
Mch6g1931 634 Gene3D Transferase(Phosphotransferase) domain 1 402 624 - -
Mch6g1931 634 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Mch6g1931 634 Gene3D Ribonuclease Inhibitor 140 227 IPR032675 -
Mch6g1931 634 FunFam Probable inactive receptor kinase RLK902 24 183 - -
Mch6g1931 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Mch6g1931 634 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
Mch6g1931 634 ProSiteProfiles Protein kinase domain profile. 326 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g1931 634 PANTHER OS05G0588300 PROTEIN 6 613 IPR050994 -
Mch6g1931 634 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Mch6g1931 634 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Mch6g1931 634 MobiDBLite consensus disorder prediction 595 634 - -
Mch6g1931 634 MobiDBLite consensus disorder prediction 222 242 - -
Mch6g1931 634 SUPERFAMILY L domain-like 37 208 - -
Mch6g1931 634 Gene3D Ribonuclease Inhibitor 26 139 IPR032675 -
Mch6g1931 634 FunFam pollen receptor-like kinase 1 295 400 - -
Mch6g1931 634 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Mch6g1931 634 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Mch6g1931 634 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Mch6g1931 634 MobiDBLite consensus disorder prediction 602 634 - -
Mch6g1931 634 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0784 Mch-Chr2:5394060 Mch6g1931 Mch-Chr6:21803876 4.78E-163 dispersed
Mch6g1875 Mch-Chr6:21278047 Mch6g1931 Mch-Chr6:21803876 4.10E-192 dispersed
Mch6g1931 Mch-Chr6:21803876 Mch8g3115 Mch-Chr8:33507000 2.18E-158 dispersed
Mch6g1931 Mch-Chr6:21803876 Mch10g0102 Mch-Chr10:592577 1.46E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77510 PF07714 PK_Tyr_Ser-Thr 4.30E-34 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1931 - - - 0.0