Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1933 ATGGATTTCGACTCTGATACTTTCGGCCTCCCCATCAAGTTCACCGAGCACCGGAATCTTCTGAAGCTTACTTCCCCGCCGGGAATTAGGCCGAGGGTTGTGCGGATTTCCGTAACCGACGGTGATGCTACCGATTCATCCAGCGACGACGAGGCCGAGATGTTCGGTCGCCACAGAGTCAAGAAGTTTGTCAATGAAATTACGATCGAGCCCTCCTGTTCCGGCGAAGGGAATGGGGTTTGGGGTTCGAATAGGTCGGCGAGGACCGGCCGGAGGAGGTCGCCGGGGAAATGTGGGGTTCCGTCGAGGAATCGTCGGTCGTCGTTGAAGGTTCCGGGTGGGAAGAAGTTCCGTGGGGTTAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAAATCAGAGACCCTCTCCGCCGTGTGCGGCTGTGGCTCGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTGTACGACAACGCCGCGATTCAGCTCCGTGGACCCGACGCGCTTACCAATTTCACCACCGTCCCGAAATCCTTCACCGGGAAGTGCTCCGGGTACAACTCCGGCGAGGAATCGAACAACAACATTTGCTCTCCGACTTCCGTCCTCCGGTGCCCCTCTCCGCCCAACGAAGAAGCCCAATCGCAAATCCCCGGCGAGCACGACAACTCATGCGTGTCGGAAAATTTCTCGGAGTTCTCGGAGTTCTCGAGCTCCGACACCTTCATTCCCGATGACATTTTCGACTTCGAATCTTCGGTTCCGACCTTATTTGACGAGATGGGTCTCCAACTCCAAAGCAATTTACTCGGAGACGACGATTTCACCGCCGTCTTCCACAGCCCCGTGGATGAACTCGGACTCGGGTTCGGATTCGGGTTCGAGTACCCGACTCCCCCTTCCGACGACTACTTCCAAGACTTCGGCGATGTATTCGGGCCGGATCCTCTCGTCGCGCTC 960 58.02 MDFDSDTFGLPIKFTEHRNLLKLTSPPGIRPRVVRISVTDGDATDSSSDDEAEMFGRHRVKKFVNEITIEPSCSGEGNGVWGSNRSARTGRRRSPGKCGVPSRNRRSSLKVPGGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTVPKSFTGKCSGYNSGEESNNNICSPTSVLRCPSPPNEEAQSQIPGEHDNSCVSENFSEFSEFSSSDTFIPDDIFDFESSVPTLFDEMGLQLQSNLLGDDDFTAVFHSPVDELGLGFGFGFEYPTPPSDDYFQDFGDVFGPDPLVAL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21837836 21838795 + MC06g1447 Mch6g1933 691380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1933 320 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 MobiDBLite consensus disorder prediction 74 118 - -
Mch6g1933 320 Pfam AP2 domain 116 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 SMART rav1_2 116 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 CDD AP2 115 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g1933 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 221 IPR050913 -
Mch6g1933 320 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Mch6g1933 320 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0100 Mch-Chr10:569022 Mch6g1933 Mch-Chr6:21837836 7.60E-64 dispersed
Mch2g0782 Mch-Chr2:5388012 Mch6g1933 Mch-Chr6:21837836 3.86E-33 dispersed
Mch6g1869 Mch-Chr6:21223966 Mch6g1933 Mch-Chr6:21837836 9.40E-26 dispersed
Mch6g1933 Mch-Chr6:21837836 Mch7g0231 Mch-Chr7:2846431 1.13E-38 dispersed
Mch9g1891 Mch-Chr9:20537313 Mch6g1933 Mch-Chr6:21837836 6.87E-10 dispersed
Mch10g0865 Mch-Chr10:6087117 Mch6g1933 Mch-Chr6:21837836 3.27E-87 wgd
Mch5g0450 Mch-Chr5:3040136 Mch6g1933 Mch-Chr6:21837836 8.37E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43596 PF00847 AP2 1.30E-13 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1933 - - - 0.0