Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mch6g1953	CTCCCATTGCTCCTTCTCCCCGCCATGACCCTGCCGGAAGTTCTCTTGCCGCGCGCCGCCGACCGAGGCCCCGTCGTTCCCGTCACCGACCTCGTCAGGTTCCTCGAGCGCCTTCAGCTCGTTGCCTTCAACTCCTCCGGGAAGCTGGATTTCGATCTGAAATACTATGTCGATTTGTCGCTCAAGTACGATCTCAATTCTACCGAGCTCGCATTCGATGCCCTCGAGAGAGCCCCCAATGGCTCCGTCCCGGTTGAGCAACTGAAGACGTTCATTAGGGAGTATTTCGGAGGCGCCGGAAACGATTTGGTGTATTCGGAGCCGGCGGATTTTGTCCCCCAGCCTACGGGCTTTTTGCCCAAGGTCGAGAACGCGGAGGTCAGAGCTTGGGCTTTCGATATCCATAATTTCTGGAAGAATCTCAGCCGTAGAACCTCCGATGATCTCCTCAAGCGGCCGGATTCCCACACTCTGCTGCCGCTGCCGAAACCCTGCGTCGTTCCGGGATCAAGATTCCGGGAAATTTACTATTGGGATTCGTACTGGATTATCAGAGGTTTATTAGCAAGTAAAATGTATGATACTGCAAAGGGAATTGTTATCAATCTCATTTCAATGATAGAAGATTTTGGCCATGTTTTGAATGGTGCCAGAGCTTATTACACTAACAGAAGTCAGCCTCCCCTCTTGAGTTCCATGGTTTATGACATATACCTTAGGACAGAGGATTTAGAGTTTGTGAGGACTGCACTCCCAGCTTTGATCGAAGAGCACAAGTTTTGGAATTCAGGATTCCATTCGGTTGCTGTCCGGAATGCTCCTGGTGGAAATCATTCTTTGTGTAGGTATTATGCCATGTGGAACGAACCAAGGCCGGAATCTTCACTGTTGGACGAGAAACTTGCTTCGAAGTTAGTAAATAACCATGAAAAGCAGCATCTGTACCGAGAACTCGCAACAGCAGCTGAATCTGGTTGGGATTTCAGTTCAAGATGGATGAGGGATTCGACTGACTTATCGACATTGGCTACATCTTCAATCCTGCCTGTTGATCTCAATGCATTTGTACTCAAGATGGAACTTGACATTTCCAATTTGGCAAGAGCTATTGGAGATTACTGCACTGCAGATCACTTCTTGGAAGCTTCTATAGTCAGAAAGAGGACAATCAACGCTATTTTTTGGAATTCAGAGAAGGGACAATGGCTGGATTACTGGCTTGAAAATGGCTCTTACAAGGGAGCCCACACATGGGATGCTCGGAACCAGAATCAGGAAATATATGCTTCAAACTTCATTCCGTTGTGGATCGAATCGTTCTACTCCGATAACAGACAGCTGAAGAAAGTCTTGAAAAGTTTACGGAACTCTGGCTTGCTTTGCAATGCTGGGATTGCAACATCATTGATCAATTCAGGAGAACAATGGGACTTTCCGAACGGCTGGGCGCCAATTCAGCACATGATTGTCGAGGGACTAGCAAGATCCGGATTGAAAGAAGCAAGGGCATTGGCGGAAGATATCGCCATGAAATGGCTCCGAACCAACTATGTAGCTTACAAGAATACAGGGTATATGCATGAGAAATACGATGTCGAAAAGTGTGGAGACTTTGGTGGAGGAGGTGAATATATCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCATTCCTCGAAGAGTTTGGATGGCCTGCAGATCAAAACATAGACTGCTACTTACCTTCTTAA	1737	47.32	LPLLLLPAMTLPEVLLPRAADRGPVVPVTDLVRFLERLQLVAFNSSGKLDFDLKYYVDLSLKYDLNSTELAFDALERAPNGSVPVEQLKTFIREYFGGAGNDLVYSEPADFVPQPTGFLPKVENAEVRAWAFDIHNFWKNLSRRTSDDLLKRPDSHTLLPLPKPCVVPGSRFREIYYWDSYWIIRGLLASKMYDTAKGIVINLISMIEDFGHVLNGARAYYTNRSQPPLLSSMVYDIYLRTEDLEFVRTALPALIEEHKFWNSGFHSVAVRNAPGGNHSLCRYYAMWNEPRPESSLLDEKLASKLVNNHEKQHLYRELATAAESGWDFSSRWMRDSTDLSTLATSSILPVDLNAFVLKMELDISNLARAIGDYCTADHFLEASIVRKRTINAIFWNSEKGQWLDYWLENGSYKGAHTWDARNQNQEIYASNFIPLWIESFYSDNRQLKKVLKSLRNSGLLCNAGIATSLINSGEQWDFPNGWAPIQHMIVEGLARSGLKEARALAEDIAMKWLRTNYVAYKNTGYMHEKYDVEKCGDFGGGGEYIPQTGFGWSNGVVLAFLEEFGWPADQNIDCYLPS	578

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	22001469	22005224	+	MC06g1466	Mch6g1953	691400

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mch6g1953	578	PANTHER	TREHALASE	48	574	IPR001661	GO:0004555(InterPro)\|GO:0004555(PANTHER)\|GO:0005991(InterPro)\|GO:0005993(PANTHER)
Mch6g1953	578	ProSitePatterns	Trehalase signature 2.	475	484	IPR018232	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	Gene3D	-	37	574	IPR012341	GO:0005975(InterPro)
Mch6g1953	578	SUPERFAMILY	Six-hairpin glycosidases	44	567	IPR008928	GO:0005975(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	280	297	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	315	332	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	347	364	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	548	561	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	468	484	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	210	228	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	PRINTS	Glycosyl hydrolase family 37 signature	390	406	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)
Mch6g1953	578	Pfam	Trehalase	49	565	IPR001661	GO:0004555(InterPro)\|GO:0005991(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mch6g1953	K01194	-	-	csv:101208719	1017.68

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Mch6g1952	Mch-Chr6:21988289	Mch6g1953	Mch-Chr6:22001469	0	tandem

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Mch6g1953	.	21	573	Trehalose Biosynthesis Gene Families	AT4G24040	57.5	1.1e-193	673.3
Mch6g1952	.	42	594	Trehalose Biosynthesis Gene Families	AT4G24040	57.3	2.6e-190	662.1
Mch4g0135	.	1	841	Trehalose Biosynthesis Gene Families	AT1G06410	78.0	0.0e+00	1374.0
Mch1g1957	.	1	845	Trehalose Biosynthesis Gene Families	AT1G06410	75.6	0.0e+00	1349.7
Mch10g1678	.	1	844	Trehalose Biosynthesis Gene Families	AT1G06410	66.3	0.0e+00	1147.1
Mch9g1356	.	1	848	Trehalose Biosynthesis Gene Families	AT1G06410	64.0	0.0e+00	1136.7
Mch9g2224	.	1	842	Trehalose Biosynthesis Gene Families	AT1G06410	62.6	0.0e+00	1097.8
Mch6g0163	.	1	852	Trehalose Biosynthesis Gene Families	AT1G06410	59.9	2.2e-304	1041.6
Mch2g0654	.	1	771	Trehalose Biosynthesis Gene Families	AT1G06410	53.6	4.7e-251	864.4
Mch11g0982	.	87	698	Trehalose Biosynthesis Gene Families	AT1G16980	65.3	3.6e-246	847.8
Mch3g1040	.	78	695	Trehalose Biosynthesis Gene Families	AT1G16980	63.5	7.7e-241	830.1
Mch9g2224	.	1	861	Trehalose Biosynthesis Gene Families	AT1G23870	74.9	0.0e+00	1354.3
Mch6g0163	.	1	856	Trehalose Biosynthesis Gene Families	AT1G23870	67.1	0.0e+00	1221.5
Mch9g1356	.	1	859	Trehalose Biosynthesis Gene Families	AT1G23870	61.8	0.0e+00	1126.3
Mch10g1678	.	1	843	Trehalose Biosynthesis Gene Families	AT1G23870	62.6	0.0e+00	1109.0
Mch1g1957	.	1	846	Trehalose Biosynthesis Gene Families	AT1G23870	61.2	0.0e+00	1104.4
Mch4g0135	.	1	842	Trehalose Biosynthesis Gene Families	AT1G23870	61.1	0.0e+00	1098.2
Mch9g2224	.	1	861	Trehalose Biosynthesis Gene Families	AT1G60140	73.7	0.0e+00	1341.6
Mch6g0163	.	1	856	Trehalose Biosynthesis Gene Families	AT1G60140	67.4	0.0e+00	1209.5
Mch9g1356	.	1	856	Trehalose Biosynthesis Gene Families	AT1G60140	61.3	0.0e+00	1085.9
Mch10g1678	.	1	848	Trehalose Biosynthesis Gene Families	AT1G60140	60.4	0.0e+00	1084.7
Mch4g0135	.	1	845	Trehalose Biosynthesis Gene Families	AT1G60140	60.8	0.0e+00	1079.3
Mch1g1957	.	1	850	Trehalose Biosynthesis Gene Families	AT1G60140	59.9	3.8e-314	1073.5
Mch9g1356	.	1	853	Trehalose Biosynthesis Gene Families	AT1G68020	78.8	0.0e+00	1411.0
Mch10g1678	.	1	845	Trehalose Biosynthesis Gene Families	AT1G68020	71.2	0.0e+00	1261.1
Mch1g1957	.	1	846	Trehalose Biosynthesis Gene Families	AT1G68020	64.0	0.0e+00	1160.2
Mch4g0135	.	1	844	Trehalose Biosynthesis Gene Families	AT1G68020	63.2	0.0e+00	1140.9
Mch9g2224	.	1	839	Trehalose Biosynthesis Gene Families	AT1G68020	64.3	0.0e+00	1122.1
Mch6g0163	.	1	839	Trehalose Biosynthesis Gene Families	AT1G68020	61.4	0.0e+00	1075.8
Mch9g2224	.	1	859	Trehalose Biosynthesis Gene Families	AT1G70290	68.9	0.0e+00	1206.4
Mch6g0163	.	1	856	Trehalose Biosynthesis Gene Families	AT1G70290	63.6	0.0e+00	1110.9
Mch9g1356	.	1	853	Trehalose Biosynthesis Gene Families	AT1G70290	57.4	2.6e-294	1008.1
Mch4g0135	.	1	847	Trehalose Biosynthesis Gene Families	AT1G70290	58.4	7.4e-294	1006.5
Mch1g1957	.	1	849	Trehalose Biosynthesis Gene Families	AT1G70290	57.0	7.0e-292	1000.0
Mch10g1678	.	1	853	Trehalose Biosynthesis Gene Families	AT1G70290	56.7	8.2e-285	976.5
Mch11g0982	.	1	947	Trehalose Biosynthesis Gene Families	AT1G78580	77.8	0.0e+00	1481.8
Mch3g1040	.	1	932	Trehalose Biosynthesis Gene Families	AT1G78580	73.6	0.0e+00	1373.2
Mch9g2224	.	33	842	Trehalose Biosynthesis Gene Families	AT2G18700	61.7	1.0e-309	1059.3
Mch6g0163	.	11	838	Trehalose Biosynthesis Gene Families	AT2G18700	59.9	1.4e-298	1022.3
Mch10g1678	.	1	844	Trehalose Biosynthesis Gene Families	AT2G18700	58.5	5.2e-298	1020.4
Mch1g1957	.	1	842	Trehalose Biosynthesis Gene Families	AT2G18700	58.8	9.9e-297	1016.1
Mch4g0135	.	24	841	Trehalose Biosynthesis Gene Families	AT2G18700	58.5	2.5e-292	1001.5
Mch9g1356	.	1	848	Trehalose Biosynthesis Gene Families	AT2G18700	57.1	3.8e-288	987.6
Mch10g1678	.	1	839	Trehalose Biosynthesis Gene Families	AT4G17770	79.8	0.0e+00	1380.9
Mch9g1356	.	1	846	Trehalose Biosynthesis Gene Families	AT4G17770	70.7	0.0e+00	1257.7
Mch1g1957	.	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	66.2	0.0e+00	1174.1
Mch4g0135	.	1	849	Trehalose Biosynthesis Gene Families	AT4G17770	63.1	0.0e+00	1157.5
Mch9g2224	.	1	839	Trehalose Biosynthesis Gene Families	AT4G17770	64.8	0.0e+00	1151.7
Mch6g0163	.	1	834	Trehalose Biosynthesis Gene Families	AT4G17770	62.8	0.0e+00	1104.4
Mch11g0982	.	95	945	Trehalose Biosynthesis Gene Families	AT4G27550	61.3	9.3e-302	1032.7
Mch3g1040	.	91	926	Trehalose Biosynthesis Gene Families	AT4G27550	59.4	9.0e-289	989.6
Mch11g0982	.	1	947	Trehalose Biosynthesis Gene Families	AT1G78580	77.8	0.0e+00	1481.8
Mch3g1040	.	1	932	Trehalose Biosynthesis Gene Families	AT1G78580	73.6	0.0e+00	1373.2
Mch11g0982	.	87	698	Trehalose Biosynthesis Gene Families	AT1G16980	65.3	3.6e-246	847.8
Mch3g1040	.	78	695	Trehalose Biosynthesis Gene Families	AT1G16980	63.5	7.7e-241	830.1
Mch11g0982	.	85	623	Trehalose Biosynthesis Gene Families	AT1G17000	62.0	2.9e-194	675.6
Mch3g1040	.	92	610	Trehalose Biosynthesis Gene Families	AT1G17000	60.5	3.1e-188	655.6
Mch11g0982	.	95	945	Trehalose Biosynthesis Gene Families	AT4G27550	61.3	9.3e-302	1032.7
Mch3g1040	.	91	926	Trehalose Biosynthesis Gene Families	AT4G27550	59.4	9.0e-289	989.6
Mch10g1678	.	1	839	Trehalose Biosynthesis Gene Families	AT4G17770	79.8	0.0e+00	1380.9
Mch9g1356	.	1	846	Trehalose Biosynthesis Gene Families	AT4G17770	70.7	0.0e+00	1257.7
Mch1g1957	.	1	838	Trehalose Biosynthesis Gene Families	AT4G17770	66.2	0.0e+00	1174.1
Mch4g0135	.	1	849	Trehalose Biosynthesis Gene Families	AT4G17770	63.1	0.0e+00	1157.5
Mch9g2224	.	1	839	Trehalose Biosynthesis Gene Families	AT4G17770	64.8	0.0e+00	1151.7
Mch6g0163	.	1	834	Trehalose Biosynthesis Gene Families	AT4G17770	62.8	0.0e+00	1104.4
Mch9g1356	.	1	853	Trehalose Biosynthesis Gene Families	AT1G68020	78.8	0.0e+00	1411.0
Mch10g1678	.	1	845	Trehalose Biosynthesis Gene Families	AT1G68020	71.2	0.0e+00	1261.1
Mch1g1957	.	1	846	Trehalose Biosynthesis Gene Families	AT1G68020	64.0	0.0e+00	1160.2
Mch4g0135	.	1	844	Trehalose Biosynthesis Gene Families	AT1G68020	63.2	0.0e+00	1140.9
Mch9g2224	.	1	839	Trehalose Biosynthesis Gene Families	AT1G68020	64.3	0.0e+00	1122.1
Mch6g0163	.	1	839	Trehalose Biosynthesis Gene Families	AT1G68020	61.4	0.0e+00	1075.8
Mch4g0135	.	1	841	Trehalose Biosynthesis Gene Families	AT1G06410	78.0	0.0e+00	1374.0
Mch1g1957	.	1	845	Trehalose Biosynthesis Gene Families	AT1G06410	75.6	0.0e+00	1349.7
Mch10g1678	.	1	844	Trehalose Biosynthesis Gene Families	AT1G06410	66.3	0.0e+00	1147.1
Mch9g1356	.	1	848	Trehalose Biosynthesis Gene Families	AT1G06410	64.0	0.0e+00	1136.7
Mch9g2224	.	1	842	Trehalose Biosynthesis Gene Families	AT1G06410	62.6	0.0e+00	1097.8
Mch6g0163	.	1	852	Trehalose Biosynthesis Gene Families	AT1G06410	59.9	2.2e-304	1041.6
Mch2g0654	.	1	771	Trehalose Biosynthesis Gene Families	AT1G06410	53.6	4.7e-251	864.4
Mch9g2224	.	1	859	Trehalose Biosynthesis Gene Families	AT1G70290	68.9	0.0e+00	1206.4
Mch6g0163	.	1	856	Trehalose Biosynthesis Gene Families	AT1G70290	63.6	0.0e+00	1110.9
Mch9g1356	.	1	853	Trehalose Biosynthesis Gene Families	AT1G70290	57.4	2.6e-294	1008.1
Mch4g0135	.	1	847	Trehalose Biosynthesis Gene Families	AT1G70290	58.4	7.4e-294	1006.5
Mch1g1957	.	1	849	Trehalose Biosynthesis Gene Families	AT1G70290	57.0	7.0e-292	1000.0
Mch10g1678	.	1	853	Trehalose Biosynthesis Gene Families	AT1G70290	56.7	8.2e-285	976.5
Mch9g2224	.	1	861	Trehalose Biosynthesis Gene Families	AT1G23870	74.9	0.0e+00	1354.3
Mch6g0163	.	1	856	Trehalose Biosynthesis Gene Families	AT1G23870	67.1	0.0e+00	1221.5
Mch9g1356	.	1	859	Trehalose Biosynthesis Gene Families	AT1G23870	61.8	0.0e+00	1126.3
Mch10g1678	.	1	843	Trehalose Biosynthesis Gene Families	AT1G23870	62.6	0.0e+00	1109.0
Mch1g1957	.	1	846	Trehalose Biosynthesis Gene Families	AT1G23870	61.2	0.0e+00	1104.4
Mch4g0135	.	1	842	Trehalose Biosynthesis Gene Families	AT1G23870	61.1	0.0e+00	1098.2
Mch9g2224	.	1	861	Trehalose Biosynthesis Gene Families	AT1G60140	73.7	0.0e+00	1341.6
Mch6g0163	.	1	856	Trehalose Biosynthesis Gene Families	AT1G60140	67.4	0.0e+00	1209.5
Mch9g1356	.	1	856	Trehalose Biosynthesis Gene Families	AT1G60140	61.3	0.0e+00	1085.9
Mch10g1678	.	1	848	Trehalose Biosynthesis Gene Families	AT1G60140	60.4	0.0e+00	1084.7
Mch4g0135	.	1	845	Trehalose Biosynthesis Gene Families	AT1G60140	60.8	0.0e+00	1079.3
Mch1g1957	.	1	850	Trehalose Biosynthesis Gene Families	AT1G60140	59.9	3.8e-314	1073.5
Mch9g2224	.	33	842	Trehalose Biosynthesis Gene Families	AT2G18700	61.7	1.0e-309	1059.3
Mch6g0163	.	11	838	Trehalose Biosynthesis Gene Families	AT2G18700	59.9	1.4e-298	1022.3
Mch10g1678	.	1	844	Trehalose Biosynthesis Gene Families	AT2G18700	58.5	5.2e-298	1020.4
Mch1g1957	.	1	842	Trehalose Biosynthesis Gene Families	AT2G18700	58.8	9.9e-297	1016.1
Mch4g0135	.	24	841	Trehalose Biosynthesis Gene Families	AT2G18700	58.5	2.5e-292	1001.5
Mch9g1356	.	1	848	Trehalose Biosynthesis Gene Families	AT2G18700	57.1	3.8e-288	987.6
Mch6g1953	.	21	573	Trehalose Biosynthesis Gene Families	AT4G24040	57.5	1.1e-193	673.3
Mch6g1952	.	42	594	Trehalose Biosynthesis Gene Families	AT4G24040	57.3	2.6e-190	662.1

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0006557	1	3	1	1	1	1	2	2	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	2	1	38