Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g1960 GGATGCCTGTTCGCAATTTCCATTGCGAAAGAGGAAGCAACGAAATTGGGGACTGTCATTGGGATAGACTTGGGCACAACTTATTCTTGTGTTGGAGTCTACAAGAATGGACATGTAGAAATTATAGCCAATGACCAAGGAAATCGTATTACCCCTTCTTGGGTCGCTTTCACTGATAGTGAGAGATTGATCGGTGAGGCTGCGAAGAATCAAGCAGCTGTCAACCCCGAGAGGACAATCTTTGATGTCAAGAGACTTATTGGTAGAAAGTTTGACGATAAAGAGGTTCAGAAGGACATGAAACTCGTTCCTTATAAGATTGTGAATAAGGATGGAAAGCCCTACATTCAAGTGAAGATCAAGGATGGTGAGACCAAGGTGTTCAGCCCTGAGGAGATCAGTGCTATGGTTCTCACAAAGATGAAGGAAACAGCCGAAGCATTCCTCGGCAAGAAAATCAAGGACGCCGTTGTCACAGTTCCAGCTTACTTCAATGATGCCCAAAGGCAAGCAACCAAGGATGCCGGTATTATTGCTGGCCTCAACGTTGCCAGGATCATCAATGAGCCCACCGCGGCTGCCATTGCGTATGGTTTGGACAAGAAAGGTGGCGAGAAGAATATCCTTGTTTTTGACCTTGGTGGTGGAACTTTTGATGTCAGTATCTTGACCATTGACAATGGTGTTTTTGAGGTTCTTGCCACAAACGGAGACACTCACTTGGGAGGTGAGGACTTTGACCAGAGGATTATGGAATACTTCATCAAATTGATTAAGAAGAAGCACGGAAAGGATATTAGCAAGGACAACAGGGCACTTGGAAAGCTAAGAAGGGAAGCTGAGCGTGCCAAGAGGGCATTGAGTAGCCAGCACCAGATCCGTGTGGAGATCGAATCCCTCTTCGATGGAGTTGACTTCTCTGAGCCACTGACCCGAGCTCGATTCGAAGAGTTGAACAATGACTTGTTCAGAAAGACCATGGGTCCAGTGAAGAAGGCCATGGATGATGCAGGATTGGAGAAGAACCAAATCGATGAAATAGTCCTTGTTGGTGGCAGCACCAGGATTCCCAAAGTTCAACAGCTCCTCAAAGACTACTTCGACGGCAAGGAACCTAACAAGGGTGTGAACCCTGATGAGGCCGTTGCCTATGGTGCTGCTGTACAAGGAAGCATCTTGAGTGGAGAGGGTGGTGAAGAAACAAAAGATATCCTTCTTCTTGACGTTGCCCCTCTTACCCTTGGAATTGAGACTGTTGGTGGAGTGATGACCAAATTGATCCCCAGAAACACTGTCATCCCAACAAAGAAATCTCAAGTCTTCACCACCTACCAGGATCAGCAGACCACCGTCTCCATTCAGGTCTTTGAAGGTGAGAGGAGTCTCACTAAGGACTGCAGGAATCTTGGGAAATTTGATCTAACTGGAATTCCTCCAGCACCAAGGGGTACCCCACAAATTGAGGTCACCTTTGAGGTTGATGCCAATGGTATCCTGAACGTGAAGGCCGAAGACAAGGGCACTGGTAAATCCGAGAAGATCACCATCACCAATGACAAGGGTCGGTTGAGCCAGGAGGAGATCGACCGGATGGTTCAGGAAGCCGAGGAGTTTGCAGAGGAAGACAAGAAGGTGAAGGAGAGAATCGATGCCCGCAACAGCCTGGAAACCTACACCTACAACATGAAGAGCCAGATCAACGACAAGGACAAGCTTGCTGACAAGCTTGAGTCTGATGAGAAGGAGAAAATCGAGACCGCGGTGAAGGACGCCCTCGAATGGCTCGACGACAACCAGAGTGCTGAGAAGGAAGACTATGAGGAGAAGCTCAAGGAGCTTGAGGCTGTCTGCAACCCCATCATCACCGCTGTTTACCAACGCTCCGGTGGCGCTCCTGGTGGTGGCGAGTCGGGAGAAGATGACGATTCTCACGATGAGCTTTAA 1944 48.35 GCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQIRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRNLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVQEAEEFAEEDKKVKERIDARNSLETYTYNMKSQINDKDKLADKLESDEKEKIETAVKDALEWLDDNQSAEKEDYEEKLKELEAVCNPIITAVYQRSGGAPGGGESGEDDDSHDEL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22077131 22080388 - MC06g1473 Mch6g1960 691407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g1960 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 399 556 IPR029047 -
Mch6g1960 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 550 633 IPR029048 -
Mch6g1960 647 Gene3D - 539 638 IPR029048 -
Mch6g1960 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 347 361 IPR018181 -
Mch6g1960 647 Coils Coil 266 286 - -
Mch6g1960 647 Pfam Hsp70 protein 19 626 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Mch6g1960 647 FunFam Chaperone protein HscA homolog 208 256 - -
Mch6g1960 647 Coils Coil 596 616 - -
Mch6g1960 647 Gene3D - 20 391 - -
Mch6g1960 647 FunFam Heat shock protein 70 20 207 - -
Mch6g1960 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 22 29 IPR018181 -
Mch6g1960 647 MobiDBLite consensus disorder prediction 625 647 - -
Mch6g1960 647 CDD HSPA5-like_NBD 17 391 IPR042050 -
Mch6g1960 647 Coils Coil 562 582 - -
Mch6g1960 647 Gene3D - 202 376 - -
Mch6g1960 647 FunFam Heat shock 70 kDa 398 552 - -
Mch6g1960 647 SUPERFAMILY Actin-like ATPase domain 17 201 IPR043129 -
Mch6g1960 647 FunFam Endoplasmic reticulum chaperone BiP 242 325 - -
Mch6g1960 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 397 538 IPR029047 -
Mch6g1960 647 SUPERFAMILY Actin-like ATPase domain 204 395 IPR043129 -
Mch6g1960 647 Coils Coil 528 548 - -
Mch6g1960 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 210 223 IPR018181 -
Mch6g1960 647 PANTHER HSC70CB, ISOFORM G-RELATED 17 628 IPR050451 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 484 500 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 156 176 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 46 58 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 344 360 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 18 31 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 376 396 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 403 422 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 68 76 - -
Mch6g1960 647 PRINTS 70kDa heat shock protein signature 216 226 - -
Mch6g1960 647 FunFam Luminal-binding protein 5 552 627 - -
Mch6g1960 647 Gene3D Actin; Chain A, domain 4 242 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1154 Mch-Chr4:12401800 Mch6g1960 Mch-Chr6:22077131 8.29E-182 dispersed
Mch6g1960 Mch-Chr6:22077131 Mch9g0474 Mch-Chr9:3511734 3.56E-205 dispersed
Mch6g1960 Mch-Chr6:22077131 Mch4g2128 Mch-Chr4:23316148 3.37E-285 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g1960 K09490 - csv:101207505 1201.42