Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2000 ATGGAAGAGGTGGAGGAAGCTAACAGAGTAGCTTTAGAGAGCTGCCATGGAGTTCTGAATCTCTTGGCTCAACCTGCAGACCAAATTCAGTTGAGGAATTTAATGGTGGAAACTGGGGAAGCTGTTTTCAAGTTCAGGAAAGTGGTTTCTCTTTTGAATTCTGGTTTGGGTCATGCTAGAGTCAGAAAACTCAACAAGATTTCTCTCCCTTTGCCCCAAAACACCCTCTTGGATTACCCAATTCACCATCTTCCAACCCAAAATCAAAATCTCCACCCTTCTCAGTCTGGTTTGAATGGTAAAGTTTCAACTTTTCTGGGAATCCCAGATTTAGAATTGGGTCCAAATGACAAGAACTTCCTCCAAATTCCCAGACAAGCTCCATCTTTCTTCCCTCAACACCAACAACAACAGAGGATTTTGCCTCAGCAGAAACAGATTAAACAGCAATCAGAAATGATGTTTCTTAGGAACAACAACAGCGGCATGAATCTGAATTTTGACACATCTAACTGCACATTGACAATGTCATCAGCTAGATCTTTCATTTCTTCGTTGAGTATGGACGGGAGCGTGGCGGACGGAAGCTCATTCCACTTGATCGGACCGTCGACGTCGGCCGATAACAAGAGGAAGTTTTCAGGAAGGGGAGGAGATGAGGGGAGCTTGAAATGTGGAAGCACTGGCAAATGCCACTGCTCAAAAAAGAGGAAACATAGGGTGAAAAGATCAATCAAAGTGCCTGCTATAAGTAACAAGCTTGCAGATATCCCTTCTGATGATTATTCATGGAGGAAATATGGGCAGAAGCCAATTAAGGGCTCTCCTCATCCCCGGGGTTACTACAAATGCAGCAGCATGAGAGGGTGTCCAGCGAGAAAGCACGTCGAACGGTGCTTAGAAGACCCGTCGATGCTTATCGTAACATACGAAGGAGAACACAATCACCCGAAAATGTCGACTCAATCTGCACACCCTTAG 981 44.85 MEEVEEANRVALESCHGVLNLLAQPADQIQLRNLMVETGEAVFKFRKVVSLLNSGLGHARVRKLNKISLPLPQNTLLDYPIHHLPTQNQNLHPSQSGLNGKVSTFLGIPDLELGPNDKNFLQIPRQAPSFFPQHQQQQRILPQQKQIKQQSEMMFLRNNNSGMNLNFDTSNCTLTMSSARSFISSLSMDGSVADGSSFHLIGPSTSADNKRKFSGRGGDEGSLKCGSTGKCHCSKKRKHRVKRSIKVPAISNKLADIPSDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPKMSTQSAHP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22392784 22395841 + MC06g1510 Mch6g2000 691447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2000 326 FunFam WRKY transcription factor 65 242 319 - -
Mch6g2000 326 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2000 326 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2000 326 SUPERFAMILY WRKY DNA-binding domain 256 318 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2000 326 Pfam Plant zinc cluster domain 219 256 IPR018872 -
Mch6g2000 326 Gene3D WRKY domain 242 318 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g2000 326 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 322 IPR044810 GO:0003700(InterPro)
Mch6g2000 326 SMART WRKY_cls 258 318 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0325 Mch-Chr11:2005560 Mch6g2000 Mch-Chr6:22392784 9.74E-59 dispersed
Mch6g2000 Mch-Chr6:22392784 Mch8g2135 Mch-Chr8:24456203 3.20E-25 dispersed
Mch6g2000 Mch-Chr6:22392784 Mch9g0924 Mch-Chr9:7413522 8.36E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43601 PF03106 WRKY 1.10E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2000 - - - 0.0