Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2024 ATGGCGTCTTCTAGCACTGGAAATTACAATAATAGTGTCTCCGGATCTTCCCCTTGTGGAGCATGCAAGTTTCTGAGGCGAAAATGTGTGGCCGATTGCATTTTTGCCCCTTACTTTTGCTCGGAGCAAGGCCCTGCAAGATTCGCGGCCATTCACAAGGTGTTCGGCGCTAGCAATGTTTCCAAGTTGCTTCTCCACGTCCCTGTTCCTGATCGCTGTGAGGCTGTTGTCACTATTGCGTATGAAGCTCAGGCCAGGATTCGAGATCCTGTTTATGGCTGTGTGGCTCATATTTTTGCTCTCCAACAACAGGTGGCATACTTGCAAACACAGCTGATGCAAGCCAAGGCTCAACTGGCTCAAACCCTAATCGATTCAGAAGGAAATTACATGGAGAAGAGCTCCAATCTCCCCACCGGATCATTCCCAAATTTCCCACAGAGCTCTCTGGAATCGGCTGCCAATAGCGATGAGGCAATAATGATGAACAATTTTCAGGAGGAGAGCCAAAGCAGATCACCAGAAGAATTAGCTCATCAGTTTCAACAATTTTCTAGAAAAAGATTAGCTTGTCATGGTGATGTGGGGGAGCTCCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA 627 47.05 MASSSTGNYNNSVSGSSPCGACKFLRRKCVADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLIDSEGNYMEKSSNLPTGSFPNFPQSSLESAANSDEAIMMNNFQEESQSRSPEELAHQFQQFSRKRLACHGDVGELQALALRMMRN 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22582221 22583517 + MC06g1532 Mch6g2024 691471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2024 208 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 177 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Mch6g2024 208 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
Mch6g2024 208 Pfam Lateral organ boundaries (LOB) domain 18 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2024 Mch-Chr6:22582221 Mch7g0754 Mch-Chr7:12166732 1.60E-50 dispersed
Mch6g2024 Mch-Chr6:22582221 Mch6g2025 Mch-Chr6:22589244 5.83E-51 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43605 PF03195 LOB 1.20E-36 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2024 K13944 - csv:101214521 274.633