Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2033 ATGGAGACCTCCTACTTTTCGTTTTCTGATTCTGATTTCTCGACGGAATCTTCGTTCGGTTCATCGGAAATGGAATCGTCCTTCTCATGGAGCGAGATTTTCTCGATCCACGGCTCCCTCGCATTTCCCGATGATTTTCTCGGCAGCCAAACATCAGGAACCGAATCCAAAATTGTGGTTAAGGAAGAAATCGAAGTGAGTTCGACTGATTTCGAGGAAGAGAAACAGAGGAAGACGCCGGAGAAGAGTTACAGAGGGGTGAGGCGGCGGCCGTGGGGGAAGTACGCGGCGGAGATTAGGGATTCGACGAGGCACGGAGTTAGGGTTTGGCTGGGGACTTTCGACAGCGCCGAAGCGGCGGCTTTAGCGTACGATCAAGCGGCATTTTCGATGAGAGGTTCAATGGCGGTGCTGAATTTTCCGGTAGAAATGGTGAGGGAATCGCTGCAGGACATTAAGTATCAACTGGAGGAGGGGTGCTCGCCGGTGGTGGCTTTGAAGAGAAAACACTCGCTGAGAAGGAAATCCGCGGCGGCGGCGGTGGAGAAGAAGAAGAAGATAAAGAAAACTAACAATGTGATGATTTTGGAAGATTTGGGAACGGAGTATTTGGAGGAACTTTTG 624 50.64 METSYFSFSDSDFSTESSFGSSEMESSFSWSEIFSIHGSLAFPDDFLGSQTSGTESKIVVKEEIEVSSTDFEEEKQRKTPEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSMAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSLRRKSAAAAVEKKKKIKKTNNVMILEDLGTEYLEELL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22642161 22642784 + MC06g1540 Mch6g2033 691480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2033 208 PANTHER DNA-BINDING DOMAIN 32 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Mch6g2033 208 FunFam Ethylene-responsive transcription factor 2 82 143 - -
Mch6g2033 208 MobiDBLite consensus disorder prediction 1 22 - -
Mch6g2033 208 Pfam AP2 domain 83 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 Gene3D AP2/ERF domain 82 143 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 SMART rav1_2 83 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 CDD AP2 82 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g2033 208 SUPERFAMILY DNA-binding domain 83 143 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2033 Mch-Chr6:22642161 Mch9g0942 Mch-Chr9:7684745 4.83E-59 dispersed
Mch5g0089 Mch-Chr5:574484 Mch6g2033 Mch-Chr6:22642161 4.02E-26 wgd
Mch6g2033 Mch-Chr6:22642161 Mch7g0967 Mch-Chr7:14046891 2.78E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43607 PF00847 AP2 7.20E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2033 K14516 - csv:101220325 270.011