Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g2055 GACCCAGATGCAGTAGTGGTAGCTCTTTCTCCAGAAACCCTAATGACAACGAATCGATTCGTGTGCGAAATATGCAATAAGGGATTTCGAAGAGACCAAAACCTACAATTGCATCGGCGAGGGCACAACTTGCCATGGAAGCTGAAGCAGAGGACGGGCGGGAGTGGGAGCGAGATGAAGAGGAGGGTGTACGTGTGCCCGGAGCCAACGTGCGTCCACCACAGTCCCGCGAGGGCGCTCGGAGACCTCACCGGAGTAAAGAAGCATTTCAGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAGAAATGCTCCAAAAAGTATGCTGTTCAATCCGACTTAAAAGCTCATACCAAAACTTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTCTCCAGGAGAGACAGTTTCATAACTCACAGAGCTTTCTGTGATGCCTTAACAGAAGAAAACAACAAATTAGCGCGCCGAGGCGCCATGGCTTCCACCATGGCCTCTCCCTTCCAACAACAAGTCCCTCGCCTTCCCTCTCCGCCATTAACGCTGCCACATGACCTCATGCCCATTCCCCCGAAGCCCCTTAACGTATCAGCCGGAGCCATGTTCTCGTCGTCCAACTCCGAACGAAATGACCACCAGTTTCCTTCCCCCTCCGCCCTCATGTCTGCCACCGCATTGCTACAGAAAGCGGTGCAAATGGGTGCTGCTAAGGGCTACGTTACAAGGATGGCTCCTTCTTCCTTTGGCGGACTATTTCCCCAGACTGTTGCTAGCTTGCCCACCAGCTATTTGCAGAAATGCCCACAAGGAACCACTTCAGCTCAGCTGCTTTATGATTGCAGCACGGTGGACGTCGAGATGATCAACGACATTTCGACGCTGAATGGGATGTTTGATCAGCCGCTCATGGAGGCCACGAGGAAGAAAATGAACGACAAAAATGGCGCCGCGAAGACGATGACATTGGATTTGTTGGGGGCTGAGGGAGCAAAGAAGGAAGATCCCTTTGGAGGGTTGATGGAGAACATGAGTTACTTTCGACATCAAGCAGCAATGGGAAGGCACACATGGGAGATTTGA 1089 51.42 DPDAVVVALSPETLMTTNRFVCEICNKGFRRDQNLQLHRRGHNLPWKLKQRTGGSGSEMKRRVYVCPEPTCVHHSPARALGDLTGVKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHTKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLARRGAMASTMASPFQQQVPRLPSPPLTLPHDLMPIPPKPLNVSAGAMFSSSNSERNDHQFPSPSALMSATALLQKAVQMGAAKGYVTRMAPSSFGGLFPQTVASLPTSYLQKCPQGTTSAQLLYDCSTVDVEMINDISTLNGMFDQPLMEATRKKMNDKNGAAKTMTLDLLGAEGAKKEDPFGGLMENMSYFRHQAAMGRHTWEI 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22817996 22821184 - MC06g1559 Mch6g2055 691502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g2055 362 SMART c2h2final6 64 94 IPR013087 -
Mch6g2055 362 SMART c2h2final6 20 42 IPR013087 -
Mch6g2055 362 SMART c2h2final6 99 119 IPR013087 -
Mch6g2055 362 Gene3D Classic Zinc Finger 78 157 - -
Mch6g2055 362 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Mch6g2055 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 127 IPR013087 -
Mch6g2055 362 FunFam protein indeterminate-domain 5, chloroplastic-like 77 156 - -
Mch6g2055 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Mch6g2055 362 SUPERFAMILY beta-beta-alpha zinc fingers 19 119 IPR036236 -
Mch6g2055 362 Pfam Zinc finger, C2H2 type 20 42 IPR013087 -
Mch6g2055 362 Gene3D Classic Zinc Finger 19 43 - -
Mch6g2055 362 FunFam protein indeterminate-domain 12-like 1 70 - -
Mch6g2055 362 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 98 122 - -
Mch6g2055 362 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 125 160 - -
Mch6g2055 362 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 336 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch6g2055 362 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 60 94 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2055 Mch-Chr6:22817996 Mch9g0770 Mch-Chr9:5767274 2.26E-100 dispersed
Mch6g2055 Mch-Chr6:22817996 Mch8g0756 Mch-Chr8:5354386 5.23E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43610 PF00096 zf-C2H2 0.00055 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g2055 - - - 0.0